Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RUL31_RS16425 Genome accession   NZ_CP135964
Coordinates   3332731..3333372 (-) Length   213 a.a.
NCBI ID   WP_003327154.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CD303     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3327731..3338372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUL31_RS16390 (RUL31_16390) - 3328924..3329355 (+) 432 WP_003327161.1 Na(+)/H(+) antiporter subunit B -
  RUL31_RS16395 (RUL31_16395) - 3329355..3329696 (+) 342 WP_003327160.1 Na(+)/H(+) antiporter subunit C -
  RUL31_RS16400 (RUL31_16400) - 3329689..3331170 (+) 1482 WP_061669364.1 Na+/H+ antiporter subunit D -
  RUL31_RS16405 (RUL31_16405) - 3331176..3331652 (+) 477 WP_094232698.1 Na+/H+ antiporter subunit E -
  RUL31_RS16410 (RUL31_16410) - 3331652..3331936 (+) 285 WP_094232699.1 Na(+)/H(+) antiporter subunit F1 -
  RUL31_RS16415 (RUL31_16415) mnhG 3331920..3332294 (+) 375 WP_061570550.1 monovalent cation/H(+) antiporter subunit G -
  RUL31_RS16420 (RUL31_16420) - 3332333..3332713 (-) 381 WP_010789785.1 hotdog fold thioesterase -
  RUL31_RS16425 (RUL31_16425) comA 3332731..3333372 (-) 642 WP_003327154.1 response regulator transcription factor Regulator
  RUL31_RS16430 (RUL31_16430) comP 3333453..3335750 (-) 2298 WP_277713830.1 histidine kinase Regulator
  RUL31_RS16435 (RUL31_16435) comX 3335761..3335925 (-) 165 WP_106046982.1 competence pheromone ComX -
  RUL31_RS16440 (RUL31_16440) - 3335938..3336798 (-) 861 WP_216412504.1 polyprenyl synthetase family protein -
  RUL31_RS16445 (RUL31_16445) degQ 3336982..3337125 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  RUL31_RS16450 (RUL31_16450) - 3337585..3337944 (+) 360 WP_315915881.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23944.30 Da        Isoelectric Point: 4.7742

>NTDB_id=887845 RUL31_RS16425 WP_003327154.1 3332731..3333372(-) (comA) [Bacillus atrophaeus strain CD303]
MKKILVIDDHPAVMEGTKTILETDANLSVDCLSPDASEHFVHNHDFAAYDLILMDLNLGEINGMELSKKILKENPLCKII
VYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNDEILVDFSYFKQLVTHQKTKPAAASQNDQDVLTPRECLI
LQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=887845 RUL31_RS16425 WP_003327154.1 3332731..3333372(-) (comA) [Bacillus atrophaeus strain CD303]
ATGAAAAAGATACTTGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTCTGGAAACAGATGCAAATCT
TTCTGTCGATTGTCTCAGTCCTGATGCCAGTGAACATTTTGTTCATAATCATGATTTTGCGGCTTATGATCTCATCTTAA
TGGATTTAAATCTAGGTGAAATCAACGGGATGGAGCTTTCTAAAAAGATTTTAAAAGAGAATCCTCTCTGCAAAATCATT
GTTTATACCGGCTATGAAGTGGAGGATTATTTTGAGGAGGCCATTCGTGCGGGGCTGCACGGCGCGATCAGCAAGACCGA
ATCAAAAGAAAAGATTACGCAATACATATATCATGTGCTCAATGATGAAATTTTAGTTGATTTTTCTTATTTTAAACAGT
TGGTCACTCATCAAAAAACAAAACCTGCTGCCGCTTCGCAAAATGATCAAGATGTTCTGACGCCAAGAGAATGTCTCATT
CTTCAAGAGGTGGAAAAGGGATTTACCAATCAGGAAATAGCTGACGCGCTCCATCTGAGCAAGCGTTCGATTGAATACAG
CCTGACGTCCATTTTCAACAAACTGAATGTCGGTTCCCGGACGGAAGCGGTACTGATCGCAAAATCGGATGGCGTACTTT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

89.72

100

0.901