Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RUL31_RS02180 Genome accession   NZ_CP135964
Coordinates   443506..444456 (+) Length   316 a.a.
NCBI ID   WP_010789705.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CD303     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 438506..449456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUL31_RS02155 (RUL31_02155) rapC 439801..440949 (+) 1149 WP_004430265.1 tetratricopeptide repeat protein Regulator
  RUL31_RS02160 (RUL31_02160) phrC 440933..441052 (+) 120 WP_004430266.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  RUL31_RS02165 (RUL31_02165) - 441187..441294 (-) 108 WP_072053240.1 YjcZ family sporulation protein -
  RUL31_RS02170 (RUL31_02170) - 441498..441581 (-) 84 WP_370499808.1 YjcZ family sporulation protein -
  RUL31_RS02175 (RUL31_02175) - 441712..443076 (-) 1365 WP_315916376.1 aspartate kinase -
  RUL31_RS02180 (RUL31_02180) ceuB 443506..444456 (+) 951 WP_010789705.1 ABC transporter permease Machinery gene
  RUL31_RS02185 (RUL31_02185) - 444449..445396 (+) 948 WP_106045687.1 iron chelate uptake ABC transporter family permease subunit -
  RUL31_RS02190 (RUL31_02190) - 445390..446148 (+) 759 WP_010789703.1 ABC transporter ATP-binding protein -
  RUL31_RS02195 (RUL31_02195) - 446170..447123 (+) 954 WP_315916377.1 siderophore ABC transporter substrate-binding protein -
  RUL31_RS02200 (RUL31_02200) - 447415..448833 (-) 1419 WP_088116508.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34967.50 Da        Isoelectric Point: 9.8731

>NTDB_id=887793 RUL31_RS02180 WP_010789705.1 443506..444456(+) (ceuB) [Bacillus atrophaeus strain CD303]
MKLRYLVVLLILLAFCSIFIGVEDLSPLDLFHMNKEEASTLFASRLPRLISIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLIKMLIAFIFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNISSWLQGDFSLIVKGRYELLFLSIPLVIIAYVFADKFTVAGMGESFSVNLGLKYKRIVNIGLIISSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKSSLPHTALLGAVFVLLCDILGRIIIFPYEISIGLMVGIIGSGIFLYMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=887793 RUL31_RS02180 WP_010789705.1 443506..444456(+) (ceuB) [Bacillus atrophaeus strain CD303]
ATGAAGCTACGTTACTTAGTTGTTTTACTTATTTTACTTGCATTCTGTTCTATTTTTATCGGCGTAGAGGATCTGTCGCC
GCTGGATCTTTTTCATATGAATAAAGAAGAGGCTTCAACGCTTTTCGCCAGCCGTTTACCGAGATTAATCAGCATTATTA
TTGCAGGCATGAGCCTGAGCATCTGCGGTTTAATTATGCAGCAGATCAGCCGGAATAAATTCGTTTCGCCGACAACTGCC
GGCACGATGGATTGGGCGAGGCTCGGGATTTTGATTTCATTAATGCTGTTTACCTCTGCCAGTCCGCTGATAAAAATGCT
GATTGCTTTTATATTTGCGCTTGCGGGCAACTTCCTGTTCATGAAAATCCTTGAGAGAATAAAGTTTAATGATACGATCT
TTATTCCTCTCGTGGGCTTAATGCTTGGGAACATTGTCAGCTCGATTGCGACGTTTATCGCGTATAAATATGATTTAATC
CAAAATATTTCTTCATGGCTTCAAGGAGACTTCTCTCTCATTGTGAAAGGGAGATATGAACTTTTATTCTTGAGTATCCC
GCTTGTAATAATCGCATATGTATTTGCTGACAAATTCACAGTAGCAGGGATGGGGGAAAGCTTCTCCGTCAACCTTGGCC
TGAAATATAAACGGATTGTAAATATCGGGCTGATTATATCGTCGCTGATCACGTCCCTCGTGATTTTGACTGTCGGTATG
CTGCCGTTCCTTGGGCTAATCATTCCGAATATCGTATCCATTTACAGGGGAGACAACCTGAAAAGCAGCCTGCCCCACAC
AGCTCTTTTAGGTGCCGTTTTTGTGCTGCTTTGCGATATATTGGGCAGGATTATCATTTTTCCGTACGAAATCTCGATTG
GCTTGATGGTCGGAATCATCGGCAGCGGTATTTTCCTGTATATGCTGTTAAGGAGAAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.532

100

0.525