Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RUL31_RS01940 Genome accession   NZ_CP135964
Coordinates   377584..378021 (-) Length   145 a.a.
NCBI ID   WP_088116478.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CD303     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 372584..383021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUL31_RS01905 (RUL31_01905) - 373149..373604 (+) 456 WP_088116474.1 RDD family protein -
  RUL31_RS01910 (RUL31_01910) - 373690..374019 (+) 330 WP_010787600.1 YckD family protein -
  RUL31_RS01915 (RUL31_01915) - 374123..374548 (+) 426 WP_003328070.1 MarR family winged helix-turn-helix transcriptional regulator -
  RUL31_RS01920 (RUL31_01920) - 374536..374877 (+) 342 WP_094231349.1 DUF3147 family protein -
  RUL31_RS01925 (RUL31_01925) - 374897..375625 (+) 729 WP_315916360.1 AAA family ATPase -
  RUL31_RS01930 (RUL31_01930) - 375695..377131 (+) 1437 WP_315916361.1 family 1 glycosylhydrolase -
  RUL31_RS01935 (RUL31_01935) nin/comJ 377167..377565 (-) 399 WP_003328075.1 competence protein ComJ Regulator
  RUL31_RS01940 (RUL31_01940) nucA/comI 377584..378021 (-) 438 WP_088116478.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  RUL31_RS21245 - 378243..379193 (-) 951 WP_390841431.1 methyl-accepting chemotaxis protein -
  RUL31_RS21250 - 379404..379946 (-) 543 Protein_351 cache domain-containing protein -
  RUL31_RS01950 (RUL31_01950) hxlB 380075..380632 (-) 558 WP_010787607.1 6-phospho-3-hexuloisomerase -
  RUL31_RS01955 (RUL31_01955) hxlA 380639..381271 (-) 633 WP_315916363.1 3-hexulose-6-phosphate synthase -
  RUL31_RS01960 (RUL31_01960) - 381490..381855 (+) 366 WP_003328081.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16005.77 Da        Isoelectric Point: 4.1626

>NTDB_id=887789 RUL31_RS01940 WP_088116478.1 377584..378021(-) (nucA/comI) [Bacillus atrophaeus strain CD303]
MDLLKSLLLILVIIAAAIAGLVKGDFFSENQKASEDKEYDETISFPSDRYPETAKHIQDAINEGESDVCTIDRDGAEERR
EQSLKDVAVKTGYDRDEWPMAMCKEGGEGASVEYIAPSDNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=887789 RUL31_RS01940 WP_088116478.1 377584..378021(-) (nucA/comI) [Bacillus atrophaeus strain CD303]
ATGGACTTATTGAAATCATTGCTGCTCATATTGGTGATCATTGCTGCCGCCATTGCCGGGCTGGTTAAAGGCGATTTTTT
CTCAGAAAATCAAAAGGCGTCTGAAGACAAAGAGTATGACGAAACGATTTCTTTCCCATCAGATCGTTATCCTGAAACTG
CGAAACATATTCAAGATGCGATCAATGAAGGTGAGTCAGATGTGTGCACAATTGACAGGGACGGGGCTGAAGAACGACGA
GAACAATCTTTAAAAGATGTGGCAGTCAAAACAGGATACGATCGGGACGAATGGCCGATGGCAATGTGTAAAGAAGGCGG
AGAAGGTGCGTCTGTGGAGTATATCGCCCCGTCGGACAATCGCGGGGCTGGCTCATGGGTCGGTCATCAGCTCACTGATT
ATCCAGATGGAACGAAAGTGTTATTTACCATTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

82.639

99.31

0.821