Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RS899_RS01000 Genome accession   NZ_CP135919
Coordinates   214901..216238 (-) Length   445 a.a.
NCBI ID   WP_315808874.1    Uniprot ID   -
Organism   Pseudomonas sp. C9-3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 209901..221238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS899_RS00970 - 210797..211273 (-) 477 WP_233300029.1 PilX N-terminal domain-containing pilus assembly protein -
  RS899_RS00975 - 211270..211884 (-) 615 WP_315808872.1 hypothetical protein -
  RS899_RS00980 pilV 211944..212417 (-) 474 WP_170859268.1 type IV pilus modification protein PilV -
  RS899_RS00985 - 212414..212914 (-) 501 WP_170859285.1 GspH/FimT family pseudopilin -
  RS899_RS00990 - 213066..213578 (-) 513 WP_233300031.1 GspH/FimT family pseudopilin -
  RS899_RS00995 thiO 213773..214882 (+) 1110 WP_315808873.1 glycine oxidase ThiO -
  RS899_RS01000 pilR 214901..216238 (-) 1338 WP_315808874.1 sigma-54 dependent transcriptional regulator Regulator
  RS899_RS01005 pilS 216254..217843 (-) 1590 WP_315808875.1 sensor histidine kinase Regulator
  RS899_RS01010 - 217833..218075 (-) 243 WP_024763097.1 PP0621 family protein -
  RS899_RS01015 - 218231..219256 (-) 1026 WP_024763098.1 outer membrane protein assembly factor BamD -
  RS899_RS01020 rluD 219404..220363 (+) 960 WP_233300034.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RS899_RS01025 pgeF 220360..221085 (+) 726 WP_315808876.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49687.98 Da        Isoelectric Point: 5.4513

>NTDB_id=887658 RS899_RS01000 WP_315808874.1 214901..216238(-) (pilR) [Pseudomonas sp. C9-3]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARDFLAREPFDFCLTDMRLPDGTGLDLVQYIQQRHPQMPVAM
ITAFGSLDTAVQALKAGAFDFLTKPVDLARLRELVNSALRLRSPEAEEAPVDSRLLGDSPPMRTLRNQVAKLARSQAPVY
ISGESGSGKELVARLIHEQGPREVQTFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKLGLFQAANGGTLFLDEVADLP
LPMQVKLLRVIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTDRV
LKRLAGDSGLTAASVSADALEKLKSYRFPGNVRELENMLERAYTLCEDDVIQPHDLRLAETSSPDGAGEASLAQIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=887658 RS899_RS01000 WP_315808874.1 214901..216238(-) (pilR) [Pseudomonas sp. C9-3]
ATGAGCCGTCAAAAAGCCCTGATCGTCGACGACGAACCCGACATTCGCGAGCTGCTGGAAATCACCCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGATTTCCTAGCGCGCGAGCCGTTCGACTTCTGCCTCACCG
ACATGCGCCTGCCCGACGGCACCGGCCTGGACCTGGTGCAATACATCCAGCAACGCCATCCGCAGATGCCGGTGGCGATG
ATCACCGCCTTCGGCAGCCTGGATACCGCGGTGCAGGCGCTCAAGGCCGGCGCCTTCGACTTCCTGACCAAGCCTGTGGA
CCTCGCCCGTCTGCGTGAGCTGGTGAACTCCGCCCTGCGCCTGCGCTCGCCGGAAGCCGAGGAAGCCCCGGTGGACAGCC
GCCTGCTCGGTGATTCCCCACCCATGCGCACCCTGCGTAACCAGGTGGCCAAGCTGGCCCGCAGCCAGGCGCCGGTTTAT
ATCAGCGGCGAATCCGGCAGCGGCAAGGAACTGGTAGCCCGGTTGATCCACGAGCAAGGCCCGCGGGAGGTCCAGACCTT
CGTGCCGGTCAACTGCGGCGCCATTCCGTCAGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCGTGGAAGACAAACTGGGCCTGTTCCAGGCCGCGAACGGCGGCACCCTGTTCCTCGACGAGGTGGCCGACCTGCCA
CTGCCGATGCAGGTCAAGCTGCTGCGCGTCATCCAGGAAAAGGCCGTGCGCGCCGTGGGCGGCCAGCAGGAAGTCGCGGT
AGACGTGCGCATCCTCTGCGCGACGCACAAGGACCTGGCCGCCGAAGTGGCCGCCGGGCGCTTCCGCCAGGACCTCTACT
ATCGCCTGAACGTCATCGAACTGCGGGTTCCGCCCCTGCGCGAGCGTCGTGAAGACATCCCGCTGCTGACCGATCGCGTA
CTCAAGCGCCTCGCCGGCGACAGCGGATTGACGGCCGCCTCGGTCAGCGCCGATGCCCTGGAGAAGCTCAAGAGCTACCG
TTTCCCGGGCAACGTGCGGGAGCTTGAGAACATGCTCGAGCGCGCCTACACGCTTTGCGAAGACGACGTCATCCAGCCCC
ACGACCTGCGTCTGGCCGAGACCAGCTCCCCGGACGGCGCTGGCGAAGCCAGCCTGGCGCAGATCGACAACCTTGAGGAT
TACCTCGAGGACATCGAACGCAAGCTGATCATGCAAGCCCTGGAAGAGACTCGCTGGAACCGCACTGCGGCGGCGCAACG
CCTGGGCCTGACCTTCCGTTCCATGCGCTATCGCCTGAAGAAACTGGGGATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.764

100

0.888
  pilR Acinetobacter baumannii strain A118

48.366

100

0.499