Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   RS899_RS01005 Genome accession   NZ_CP135919
Coordinates   216254..217843 (-) Length   529 a.a.
NCBI ID   WP_315808875.1    Uniprot ID   -
Organism   Pseudomonas sp. C9-3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 211254..222843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS899_RS00975 - 211270..211884 (-) 615 WP_315808872.1 hypothetical protein -
  RS899_RS00980 pilV 211944..212417 (-) 474 WP_170859268.1 type IV pilus modification protein PilV -
  RS899_RS00985 - 212414..212914 (-) 501 WP_170859285.1 GspH/FimT family pseudopilin -
  RS899_RS00990 - 213066..213578 (-) 513 WP_233300031.1 GspH/FimT family pseudopilin -
  RS899_RS00995 thiO 213773..214882 (+) 1110 WP_315808873.1 glycine oxidase ThiO -
  RS899_RS01000 pilR 214901..216238 (-) 1338 WP_315808874.1 sigma-54 dependent transcriptional regulator Regulator
  RS899_RS01005 pilS 216254..217843 (-) 1590 WP_315808875.1 sensor histidine kinase Regulator
  RS899_RS01010 - 217833..218075 (-) 243 WP_024763097.1 PP0621 family protein -
  RS899_RS01015 - 218231..219256 (-) 1026 WP_024763098.1 outer membrane protein assembly factor BamD -
  RS899_RS01020 rluD 219404..220363 (+) 960 WP_233300034.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RS899_RS01025 pgeF 220360..221085 (+) 726 WP_315808876.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58760.13 Da        Isoelectric Point: 7.9417

>NTDB_id=887659 RS899_RS01005 WP_315808875.1 216254..217843(-) (pilS) [Pseudomonas sp. C9-3]
MVAEGISLTGQGLRVLRLYHLYRLTIGLVLVLLISSSLDDELLKLAHPELFHVGCWVYLILNILIAVLMPTPRQLLPLFI
LAALDILLLSALFYTAGGIPSGIGNLMVVAVAIANILLRGRIGLLIAAIAAINLIYLTFYLSLSQVTALNHYVQAGGLGA
LSFASALLIQALARRQQIVENIAEQRATTVANLEELNALILQRMRTGILVLGDRHRVLLANQSATTLLGGHDLPGHSLAE
YSPQLVSSLQQWQQNPALRPPSLQPMESGLTVQPSFIPLRRGNEQHILMFLEDISQIAQQAQQLKLAALGRLTAGIAHEI
RNPLGAISHAAQLLLESEEMDKPDRRLAQIIQDQSRRMNLVIENVLQLSRRRQSEPQLLDLKYWLHRYAGEMREGLREGQ
QIHVETGQGTVQTRMDPHQLTQVLTNLVQNGLRYSTQKNGTGQVWLRLYRDSETDLPVLEVLDDGPGISAEQRGKLFEPF
FTTESKGTGLGLYISRELCESNQARLDYKTRDEGGSCFRITFAHPRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=887659 RS899_RS01005 WP_315808875.1 216254..217843(-) (pilS) [Pseudomonas sp. C9-3]
GTGGTCGCTGAAGGGATCTCCCTTACGGGCCAGGGCCTGCGTGTCCTGCGCCTGTACCACCTGTATCGCCTGACCATCGG
CCTGGTACTGGTACTGCTGATCTCCAGCAGCCTGGATGATGAACTGCTCAAGCTGGCCCACCCCGAGCTTTTCCATGTCG
GCTGCTGGGTCTACCTGATCCTCAACATCCTGATCGCCGTGCTGATGCCGACACCGCGCCAGCTGCTGCCGCTGTTCATC
CTGGCAGCGCTGGACATACTCCTGCTCAGCGCGCTGTTCTATACCGCCGGCGGCATCCCCAGCGGCATCGGCAACCTGAT
GGTGGTCGCCGTGGCCATTGCCAACATCCTGCTGCGCGGGCGCATCGGCCTGCTGATCGCCGCTATCGCCGCCATCAACC
TGATCTACCTGACCTTCTACCTGAGCCTCAGCCAGGTCACCGCCCTCAACCACTACGTGCAGGCCGGCGGCCTGGGCGCC
CTGAGCTTCGCCTCGGCCCTGCTGATCCAGGCCCTGGCCCGGCGCCAGCAGATCGTCGAGAACATCGCCGAGCAGCGTGC
CACCACGGTAGCCAACCTCGAAGAGCTCAACGCGCTGATCCTGCAGCGCATGCGCACCGGTATCCTGGTACTGGGCGATC
GTCACCGCGTGCTGCTGGCCAACCAGAGCGCCACTACGCTGCTGGGCGGCCACGACCTGCCCGGCCACTCACTGGCCGAG
TACAGCCCGCAGTTGGTCTCCAGCCTGCAGCAATGGCAGCAGAACCCCGCCCTGCGCCCGCCAAGCCTGCAACCCATGGA
GTCCGGCCTGACCGTACAGCCCAGCTTCATCCCGCTGCGTCGGGGCAACGAACAGCACATCCTGATGTTCCTCGAGGACA
TTTCGCAGATCGCCCAGCAGGCCCAGCAGCTCAAGCTCGCCGCGCTTGGCCGGCTGACTGCCGGCATCGCCCATGAAATC
CGCAATCCGCTGGGCGCGATCAGCCATGCCGCCCAGTTGCTGCTGGAATCGGAAGAAATGGACAAGCCCGACCGGCGCCT
GGCGCAGATTATCCAGGACCAGTCGCGGCGCATGAACCTGGTCATCGAGAACGTTCTGCAGCTGTCGCGCCGACGCCAGT
CCGAACCGCAGCTGCTCGACCTGAAATACTGGCTGCACCGCTACGCTGGCGAGATGCGCGAAGGCCTGCGCGAGGGACAG
CAGATCCACGTGGAGACCGGCCAGGGCACCGTGCAGACGCGCATGGACCCGCATCAGTTGACGCAGGTACTGACCAACCT
CGTGCAGAATGGGTTACGGTACAGCACCCAGAAGAACGGCACCGGCCAGGTCTGGCTGCGCCTGTACCGCGACAGCGAGA
CCGACTTGCCCGTGCTGGAAGTGCTCGACGACGGTCCCGGCATCAGCGCCGAACAGCGGGGGAAACTGTTCGAGCCGTTC
TTCACCACCGAAAGCAAGGGCACAGGCCTTGGCCTGTATATCTCCCGCGAGCTGTGCGAAAGCAATCAGGCTCGACTGGA
CTACAAGACGCGTGACGAAGGCGGCAGCTGCTTCCGCATCACCTTCGCCCACCCGCGCAAACAAAGCTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

70.755

100

0.709