Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RSK81_RS08560 Genome accession   NZ_CP135591
Coordinates   1739663..1740463 (-) Length   266 a.a.
NCBI ID   WP_002914756.1    Uniprot ID   -
Organism   Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1734663..1745463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSK81_RS08545 (RSK81_08545) smc 1734865..1738401 (-) 3537 WP_315686521.1 chromosome segregation protein SMC -
  RSK81_RS08550 (RSK81_08550) rnc 1738392..1739090 (-) 699 WP_002903151.1 ribonuclease III -
  RSK81_RS08555 (RSK81_08555) - 1739212..1739571 (-) 360 WP_002906095.1 YbaN family protein -
  RSK81_RS08560 (RSK81_08560) vicX 1739663..1740463 (-) 801 WP_002914756.1 MBL fold metallo-hydrolase Regulator
  RSK81_RS08565 (RSK81_08565) micB 1740473..1741819 (-) 1347 WP_002894938.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RSK81_RS08570 (RSK81_08570) micA 1741812..1742513 (-) 702 WP_002894937.1 response regulator YycF Regulator
  RSK81_RS08575 (RSK81_08575) - 1742854..1743615 (+) 762 WP_032913415.1 amino acid ABC transporter ATP-binding protein -
  RSK81_RS08580 (RSK81_08580) - 1743630..1744442 (+) 813 WP_002906091.1 transporter substrate-binding domain-containing protein -
  RSK81_RS08585 (RSK81_08585) - 1744455..1745135 (+) 681 WP_002906090.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29677.59 Da        Isoelectric Point: 6.0734

>NTDB_id=887038 RSK81_RS08560 WP_002914756.1 1739663..1740463(-) (vicX) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
MTKGFQYSILASGSSGNCFYLETDQKRILVDAGLSGKKITSLLGEIGRKPEDLDAILVTHEHKDHIHGVGVLARKYHLDI
YANEATWKAMEKDLGKLDASQKHIFELGKTKTFGDLDVESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMAGIIE
NADGYLIESNHDIEILRSGAYPWSLKQRILSDMGHLSNEDGAETMIRTLGNRTKRIYLGHLSKENNIKELAHMTMVNQLA
QADMAVGHDFQVYDTSPDTATPLTSI

Nucleotide


Download         Length: 801 bp        

>NTDB_id=887038 RSK81_RS08560 WP_002914756.1 1739663..1740463(-) (vicX) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
ATGACTAAAGGATTTCAATACAGTATTCTGGCGTCAGGATCAAGCGGTAATTGTTTCTATCTGGAAACAGACCAAAAGCG
GATTCTGGTTGACGCTGGCTTATCAGGCAAGAAAATTACGAGCTTGCTGGGCGAAATTGGCCGCAAGCCTGAGGATTTGG
ATGCTATTTTAGTGACTCATGAGCACAAGGACCACATTCATGGCGTTGGAGTGTTGGCCCGCAAGTATCATCTGGATATT
TATGCTAATGAGGCTACTTGGAAGGCTATGGAAAAGGACTTGGGGAAGCTGGATGCTAGTCAAAAGCATATCTTTGAATT
GGGCAAGACCAAGACCTTTGGAGACTTGGATGTGGAGAGCTTTGGTGTCAGCCATGACGCAGCCTGTCCACAGTTTTACC
GCTTCATGAAAGATGACAAAAGCTTTGTCATGCTTACGGATACGGGCTATGTCAGTGACCGGATGGCTGGGATTATCGAA
AATGCCGACGGGTACTTGATTGAGAGCAACCATGATATTGAAATTCTTCGCAGCGGCGCCTATCCTTGGAGTCTCAAGCA
GCGAATTCTGTCGGATATGGGTCACCTGTCCAATGAAGATGGAGCAGAGACCATGATTCGGACTCTGGGTAATCGCACCA
AGCGAATCTATCTGGGGCATCTCAGTAAGGAAAATAATATCAAGGAATTGGCTCACATGACCATGGTCAATCAACTGGCT
CAAGCCGATATGGCAGTCGGCCATGATTTCCAGGTCTATGATACCTCGCCTGATACCGCAACACCTTTGACGAGTATTTA
A

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(14-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

81.369

98.872

0.805