Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   RSK81_RS05490 Genome accession   NZ_CP135591
Coordinates   1136257..1138218 (+) Length   653 a.a.
NCBI ID   WP_101771300.1    Uniprot ID   -
Organism   Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1131257..1143218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSK81_RS05480 (RSK81_05480) - 1132199..1132939 (-) 741 WP_315687681.1 hypothetical protein -
  RSK81_RS05485 (RSK81_05485) - 1133173..1135971 (+) 2799 WP_315687682.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  RSK81_RS05490 (RSK81_05490) amiA 1136257..1138218 (+) 1962 WP_101771300.1 peptide ABC transporter substrate-binding protein Regulator
  RSK81_RS05495 (RSK81_05495) - 1138331..1139188 (+) 858 WP_048773299.1 GNAT family N-acetyltransferase -
  RSK81_RS05500 (RSK81_05500) - 1139308..1140210 (+) 903 WP_032912458.1 LysR family transcriptional regulator -
  RSK81_RS05505 (RSK81_05505) lspA 1140214..1140681 (+) 468 WP_002909845.1 signal peptidase II -
  RSK81_RS05510 (RSK81_05510) - 1140665..1141561 (+) 897 WP_002909844.1 RluA family pseudouridine synthase -
  RSK81_RS05515 (RSK81_05515) proB 1141676..1142785 (+) 1110 WP_032912457.1 glutamate 5-kinase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72460.02 Da        Isoelectric Point: 4.5521

>NTDB_id=887034 RSK81_RS05490 WP_101771300.1 1136257..1138218(+) (amiA) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
MKASKWLIATGVALSAGLLLTACSQSSSSTNNYTYVYSSDPDSLNYLATNRATTNDVISNLVDGLFENDEYGNLVPSIAK
SWTVSKDGLTYTYKLRDDAKWYTSDGEEYAEVKAQDFVTGLKYAADENSEAIYLVQDSVKGLDAYIKGEDKNFDNVGVKA
IDDHTLQYTLARPEPYWNSKTTSTILFPVNEEFLKAEGSNFGSVKPSSILYNGPYLLKSLTSKSVMEFVKNQNYYDKDNV
TLDSIKLTYYDGNDQEALIRNFSDGVYSTARLYPNSSGFASVKKKYADNIVYSPQDSTSYYYNFNYNRQSYNHTSKTTDA
QKSATNEAIMNKDFRQAINFAFDRTSYGAQGNGEDGATKVLRNTLVPPTFVQIGDKDFGTVVGEKLVNYGSQWQGIDLSD
AQDPYYNPEKAKAKFAEAKQALQAKGVEFPIHLDMPVDQSSTIGVQWASSTKQSIESALGAENVVIDLQKMSTDDLNNIT
YFANSAAQKDYDMSTGGWTGDYQDPSTYLDTLNIKNGGSLQNFGFEPGQDNDKIKELGLDTYTKMLEEANAETNDVQLRY
EKYAEAEAWLLDSGLIIPTVSQGATPSVTKSVPFTKAYSPVGVKGSAYNFKLTQLQKDVVTTKEYEAAKKKWKEEATAAN
KKAQEELADHVEK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=887034 RSK81_RS05490 WP_101771300.1 1136257..1138218(+) (amiA) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
ATGAAAGCATCTAAATGGCTGATTGCGACTGGAGTTGCACTGAGTGCCGGGCTATTGCTTACGGCTTGTAGCCAGTCTTC
ATCTAGCACAAATAATTATACTTACGTTTATAGTTCAGACCCTGACAGCTTGAACTATCTTGCTACAAACCGTGCAACGA
CAAATGATGTCATTTCCAACCTGGTCGATGGACTTTTTGAAAATGACGAGTACGGAAATCTGGTTCCCTCTATCGCGAAG
TCATGGACAGTTTCTAAGGACGGTCTGACCTATACTTATAAGCTGCGTGATGATGCTAAATGGTACACATCCGATGGTGA
AGAATATGCAGAAGTAAAAGCTCAGGACTTTGTGACTGGCTTGAAGTATGCAGCGGATGAAAATTCTGAAGCTATTTATC
TCGTTCAGGACTCTGTGAAGGGCTTGGATGCTTATATCAAGGGTGAAGATAAGAATTTTGACAATGTTGGTGTCAAGGCT
ATTGACGACCATACTCTGCAATACACTCTGGCTCGCCCTGAGCCATATTGGAACTCTAAAACGACCAGCACGATTCTTTT
TCCAGTCAATGAAGAGTTTCTGAAAGCAGAAGGAAGCAATTTTGGCTCAGTCAAGCCATCTAGCATCCTCTACAATGGTC
CTTACTTGCTTAAGTCTCTGACTTCCAAGTCTGTGATGGAATTTGTCAAGAACCAAAACTACTATGACAAAGACAATGTT
ACTCTGGATAGTATCAAACTGACCTACTATGATGGAAATGATCAGGAAGCGCTGATTCGCAACTTCAGCGATGGCGTTTA
CAGCACGGCTCGTCTCTATCCGAATAGCTCTGGCTTTGCTTCAGTCAAGAAGAAATATGCGGACAATATCGTATACAGCC
CGCAGGATTCTACTTCTTATTACTATAATTTCAACTACAACCGTCAGTCTTACAATCATACTTCTAAAACAACAGACGCT
CAAAAATCTGCTACTAACGAAGCAATCATGAACAAGGACTTCCGTCAGGCTATTAACTTTGCCTTTGACCGTACATCTTA
TGGTGCGCAAGGAAATGGTGAAGACGGAGCGACTAAGGTCTTGAGAAACACCTTAGTGCCGCCTACTTTTGTTCAAATTG
GCGACAAGGACTTTGGAACCGTTGTTGGGGAAAAATTAGTCAACTATGGTAGCCAATGGCAAGGAATTGATCTTTCTGAC
GCTCAAGATCCTTACTACAATCCTGAAAAAGCTAAGGCGAAATTTGCAGAAGCTAAGCAAGCCTTGCAGGCTAAAGGAGT
TGAATTCCCAATTCACTTAGATATGCCTGTGGATCAGTCTAGCACGATTGGCGTTCAATGGGCTAGCTCAACTAAGCAGT
CTATCGAATCGGCTCTTGGAGCAGAAAATGTCGTGATTGACCTGCAAAAGATGAGCACAGACGATCTTAATAATATCACC
TATTTTGCTAATTCTGCTGCTCAGAAAGACTATGATATGTCTACTGGTGGCTGGACTGGTGACTACCAAGACCCATCTAC
CTACCTTGACACTCTTAATATCAAGAACGGTGGAAGCTTGCAAAACTTTGGTTTTGAACCTGGTCAAGACAATGATAAGA
TTAAAGAGCTAGGCTTGGATACATATACTAAGATGCTGGAAGAAGCCAATGCTGAAACCAACGATGTGCAGCTGCGTTAC
GAAAAGTATGCAGAAGCGGAAGCTTGGTTGCTAGATAGTGGCTTAATTATCCCGACTGTTTCACAAGGGGCAACGCCGTC
GGTTACTAAATCAGTGCCATTTACAAAGGCCTACTCACCAGTTGGTGTCAAAGGTTCAGCTTACAACTTCAAGCTGACTC
AGCTTCAGAAGGATGTTGTAACGACCAAAGAATATGAAGCTGCTAAGAAAAAATGGAAAGAAGAAGCTACTGCGGCAAAT
AAAAAAGCCCAGGAAGAACTTGCTGACCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.488

100

0.557
  amiA3 Streptococcus thermophilus LMD-9

55.099

100

0.554
  amiA3 Streptococcus thermophilus LMG 18311

54.947

100

0.553