Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | RSK81_RS01180 | Genome accession | NZ_CP135591 |
| Coordinates | 213386..214753 (+) | Length | 455 a.a. |
| NCBI ID | WP_080555828.1 | Uniprot ID | A0AA96NTF6 |
| Organism | Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 192452..237252 | 213386..214753 | within | 0 |
Gene organization within MGE regions
Location: 192452..237252
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RSK81_RS01035 (RSK81_01035) | - | 192452..194158 (+) | 1707 | WP_315687099.1 | ABC transporter ATP-binding protein | - |
| RSK81_RS12885 | - | 194160..194298 (+) | 139 | Protein_181 | ABC transporter ATP-binding protein | - |
| RSK81_RS12890 | - | 194277..195005 (+) | 729 | Protein_182 | ABC transporter ATP-binding protein | - |
| RSK81_RS12895 | rcrQ | 195141..195929 (+) | 789 | WP_410530915.1 | ABC transporter ATP-binding protein | Regulator |
| RSK81_RS01045 (RSK81_01045) | amiA | 196045..198018 (-) | 1974 | WP_315687102.1 | peptide ABC transporter substrate-binding protein | Regulator |
| RSK81_RS01050 (RSK81_01050) | - | 198246..198935 (+) | 690 | WP_002893948.1 | gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | - |
| RSK81_RS01055 (RSK81_01055) | - | 199201..199650 (+) | 450 | WP_125410571.1 | 8-oxo-dGTP diphosphatase | - |
| RSK81_RS01060 (RSK81_01060) | - | 199950..200930 (-) | 981 | WP_315687105.1 | Abi family protein | - |
| RSK81_RS01065 (RSK81_01065) | - | 201235..201636 (-) | 402 | WP_315687107.1 | transcriptional regulator | - |
| RSK81_RS01070 (RSK81_01070) | - | 201661..202164 (-) | 504 | WP_315687110.1 | hypothetical protein | - |
| RSK81_RS01075 (RSK81_01075) | - | 202240..202479 (-) | 240 | WP_061589317.1 | hypothetical protein | - |
| RSK81_RS01080 (RSK81_01080) | - | 202485..203081 (-) | 597 | WP_315687112.1 | hypothetical protein | - |
| RSK81_RS01085 (RSK81_01085) | - | 203169..203324 (-) | 156 | WP_315687113.1 | DUF2292 domain-containing protein | - |
| RSK81_RS01090 (RSK81_01090) | - | 203361..203609 (-) | 249 | Protein_193 | hypothetical protein | - |
| RSK81_RS01095 (RSK81_01095) | - | 203623..204168 (-) | 546 | WP_002913032.1 | hypothetical protein | - |
| RSK81_RS01100 (RSK81_01100) | - | 204191..204913 (-) | 723 | WP_315687116.1 | ATP-binding protein | - |
| RSK81_RS01105 (RSK81_01105) | - | 204925..205746 (-) | 822 | WP_315687118.1 | DnaD domain protein | - |
| RSK81_RS01110 (RSK81_01110) | - | 205739..206014 (-) | 276 | WP_315687119.1 | MerR family transcriptional regulator | - |
| RSK81_RS01115 (RSK81_01115) | - | 206021..206359 (-) | 339 | WP_061589313.1 | hypothetical protein | - |
| RSK81_RS01120 (RSK81_01120) | - | 206361..206612 (-) | 252 | WP_315687120.1 | hypothetical protein | - |
| RSK81_RS01125 (RSK81_01125) | - | 206639..206773 (-) | 135 | WP_260425629.1 | hypothetical protein | - |
| RSK81_RS01130 (RSK81_01130) | - | 206787..207002 (-) | 216 | WP_315687122.1 | hypothetical protein | - |
| RSK81_RS01135 (RSK81_01135) | - | 207205..207834 (-) | 630 | WP_315687125.1 | Rha family transcriptional regulator | - |
| RSK81_RS01140 (RSK81_01140) | - | 207849..208046 (-) | 198 | WP_315687126.1 | helix-turn-helix domain-containing protein | - |
| RSK81_RS01145 (RSK81_01145) | - | 208197..208691 (+) | 495 | WP_315687127.1 | helix-turn-helix domain-containing protein | - |
| RSK81_RS01150 (RSK81_01150) | - | 208805..209473 (+) | 669 | WP_315687128.1 | Fic family protein | - |
| RSK81_RS01155 (RSK81_01155) | - | 209574..210308 (+) | 735 | WP_315687129.1 | hypothetical protein | - |
| RSK81_RS01160 (RSK81_01160) | - | 210492..211637 (+) | 1146 | WP_315687130.1 | tyrosine-type recombinase/integrase | - |
| RSK81_RS01165 (RSK81_01165) | - | 211732..212178 (+) | 447 | WP_315687132.1 | dUTP diphosphatase | - |
| RSK81_RS01170 (RSK81_01170) | - | 212180..212695 (+) | 516 | WP_315687135.1 | histidine phosphatase family protein | - |
| RSK81_RS01175 (RSK81_01175) | - | 212748..213380 (+) | 633 | WP_315687137.1 | methyltransferase domain-containing protein | - |
| RSK81_RS01180 (RSK81_01180) | radA | 213386..214753 (+) | 1368 | WP_080555828.1 | DNA repair protein RadA | Machinery gene |
| RSK81_RS01185 (RSK81_01185) | - | 214869..215585 (+) | 717 | WP_315687139.1 | TIGR00266 family protein | - |
| RSK81_RS01190 (RSK81_01190) | - | 215699..216394 (+) | 696 | WP_002899169.1 | TIGR00266 family protein | - |
| RSK81_RS01195 (RSK81_01195) | - | 216684..217169 (+) | 486 | WP_002893940.1 | GNAT family N-acetyltransferase | - |
| RSK81_RS01200 (RSK81_01200) | - | 217333..217830 (+) | 498 | WP_315687142.1 | carbonic anhydrase | - |
| RSK81_RS01205 (RSK81_01205) | - | 217928..218794 (+) | 867 | WP_315687145.1 | ABC transporter permease | - |
| RSK81_RS01210 (RSK81_01210) | - | 218791..219549 (+) | 759 | WP_315687146.1 | ABC transporter ATP-binding protein | - |
| RSK81_RS01215 (RSK81_01215) | - | 219745..221226 (-) | 1482 | WP_315687743.1 | M protein trans-acting positive regulator PRD domain-containing protein | - |
| RSK81_RS01220 (RSK81_01220) | - | 221517..221756 (+) | 240 | WP_002920347.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| RSK81_RS01225 (RSK81_01225) | amaP | 221812..222393 (+) | 582 | WP_311153926.1 | alkaline shock response membrane anchor protein AmaP | - |
| RSK81_RS01230 (RSK81_01230) | - | 222405..222575 (+) | 171 | WP_002905455.1 | DUF2273 domain-containing protein | - |
| RSK81_RS01235 (RSK81_01235) | - | 222593..223183 (+) | 591 | WP_002902153.1 | Asp23/Gls24 family envelope stress response protein | - |
| RSK81_RS01240 (RSK81_01240) | - | 223260..223463 (+) | 204 | WP_002899152.1 | CsbD family protein | - |
| RSK81_RS01245 (RSK81_01245) | - | 224247..225914 (+) | 1668 | WP_268682386.1 | ribonuclease J | - |
| RSK81_RS01250 (RSK81_01250) | - | 225989..226768 (+) | 780 | WP_049552858.1 | alpha/beta hydrolase | - |
| RSK81_RS01255 (RSK81_01255) | gltX | 226875..228332 (+) | 1458 | WP_049552859.1 | glutamate--tRNA ligase | - |
| RSK81_RS01260 (RSK81_01260) | - | 228422..229057 (+) | 636 | WP_049552860.1 | DUF6287 domain-containing protein | - |
| RSK81_RS01265 (RSK81_01265) | - | 229232..230431 (+) | 1200 | WP_268697475.1 | argininosuccinate synthase | - |
| RSK81_RS01270 (RSK81_01270) | argH | 230447..231832 (+) | 1386 | WP_002907898.1 | argininosuccinate lyase | - |
| RSK81_RS01275 (RSK81_01275) | rnpA | 231981..232340 (+) | 360 | WP_315687151.1 | ribonuclease P protein component | - |
| RSK81_RS01280 (RSK81_01280) | - | 232324..233139 (+) | 816 | WP_315687153.1 | YidC/Oxa1 family membrane protein insertase | - |
| RSK81_RS01285 (RSK81_01285) | jag | 233161..234186 (+) | 1026 | WP_315687154.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| RSK81_RS01290 (RSK81_01290) | - | 234235..234867 (+) | 633 | WP_315687156.1 | HI_0552 family protein | - |
| RSK81_RS01295 (RSK81_01295) | rpmH | 235006..235140 (+) | 135 | WP_002893904.1 | 50S ribosomal protein L34 | - |
| RSK81_RS01300 (RSK81_01300) | - | 235202..235510 (-) | 309 | Protein_235 | transcriptional regulator | - |
| RSK81_RS01305 (RSK81_01305) | - | 235619..237034 (-) | 1416 | WP_315687158.1 | DUF4153 domain-containing protein | - |
| RSK81_RS01310 (RSK81_01310) | - | 237037..237252 (-) | 216 | WP_002893895.1 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 455 a.a. Molecular weight: 49818.19 Da Isoelectric Point: 5.7873
>NTDB_id=887009 RSK81_RS01180 WP_080555828.1 213386..214753(+) (radA) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
MTIVKKKTTFVCQNCEYHSPKYLGRCPNCGSWSSFVEEVEAAEVKHARVSLTGEKTRPMKLAEVTSIDVNRTKTEMDEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHQGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQNIRTE
IEKIKPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYVPKNSLNGLKVPDNIQVIGVTTIGEVLKKVFS
MTIVKKKTTFVCQNCEYHSPKYLGRCPNCGSWSSFVEEVEAAEVKHARVSLTGEKTRPMKLAEVTSIDVNRTKTEMDEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHQGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQNIRTE
IEKIKPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYVPKNSLNGLKVPDNIQVIGVTTIGEVLKKVFS
Nucleotide
Download Length: 1368 bp
>NTDB_id=887009 RSK81_RS01180 WP_080555828.1 213386..214753(+) (radA) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
ATCACCATCGTTAAGAAAAAAACGACCTTTGTCTGTCAAAATTGTGAATATCATTCGCCCAAGTACCTAGGCCGCTGTCC
TAACTGTGGCTCTTGGTCTTCTTTCGTTGAGGAAGTAGAGGCTGCAGAGGTCAAGCATGCCCGTGTTTCCTTGACAGGCG
AAAAGACCCGGCCCATGAAGCTGGCTGAGGTCACTTCGATTGATGTCAATCGGACCAAGACGGAAATGGATGAGTTCAAC
CGTGTGCTGGGTGGTGGAGTCGTGCCTGGCAGTCTGGTTCTGATTGGTGGAGATCCTGGTATCGGGAAGTCCACCCTGCT
ATTGCAGGTATCCACTCAGCTTTCTCATCAGGGCACCGTTCTCTATGTCAGCGGGGAGGAATCAGCTGAGCAGATTAAGC
TGCGGGCGGAACGCCTCGGTGATATTGACAGTGAATTTTATCTCTACGCCGAGACCAATATGCAAAATATCCGCACAGAG
ATTGAAAAGATTAAGCCGGATTTTCTGATTATTGACTCCATTCAGACAGTTATGTCGCCGGAAATTTCCAGTGTCCAAGG
CTCCGTCTCTCAAGTCCGAGAGGTGACAGCCGAGCTCATGCAGCTGGCCAAGACCAATAATATCGCGACCTTTATCGTTG
GTCACATGACCAAGGAAGGAACCTTAGCTGGTCCTCGAACGCTAGAGCACATGGTGGATACCGTGCTTTATTTTGAGGGC
GAACGTCAGCACACTTTCCGTATCTTGAGAGCAGTCAAGAACCGCTTTGGCTCAACCAATGAGATTGGTATTTTTGAGAT
GCAATCTGGCGGGCTAGTTGAGGTTGTCAATCCAAGTGAAGTCTTTCTGGAAGAGCGTCTGGACGGCGCGACAGGTTCAT
CTATCGTCGTGACTATGGAAGGAACGCGGCCGATTTTGGCAGAGGTGCAGGCTTTGGTGACACCGACCATGTTTGGCAAT
GCCAAGCGAACCACGACTGGACTGGACTTTAACCGAGCCAGCCTTATCATGGCGGTTCTGGAAAAACGGGCAGGGCTCCT
CCTGCAAAATCAAGACGCCTACCTCAAATCAGCTGGTGGTGTCAAGCTAGATGAGCCAGCCATTGATTTGGCAGTAGCGG
TCGCCATTGCTTCCAGCTACAAGGATCTGCCTACCAATCCTCAAGAGTGCTTTATCGGTGAAATTGGCCTGACTGGAGAA
ATTCGCCGGGTTAATCGCATCGAGCAGCGCATCAACGAAGCAGCAAAGCTGGGCTTCACTAAAGTCTACGTTCCTAAAAA
CTCTCTGAACGGCCTCAAAGTTCCAGACAATATCCAAGTCATTGGTGTGACGACGATTGGGGAAGTTTTAAAGAAGGTAT
TTTCTTGA
ATCACCATCGTTAAGAAAAAAACGACCTTTGTCTGTCAAAATTGTGAATATCATTCGCCCAAGTACCTAGGCCGCTGTCC
TAACTGTGGCTCTTGGTCTTCTTTCGTTGAGGAAGTAGAGGCTGCAGAGGTCAAGCATGCCCGTGTTTCCTTGACAGGCG
AAAAGACCCGGCCCATGAAGCTGGCTGAGGTCACTTCGATTGATGTCAATCGGACCAAGACGGAAATGGATGAGTTCAAC
CGTGTGCTGGGTGGTGGAGTCGTGCCTGGCAGTCTGGTTCTGATTGGTGGAGATCCTGGTATCGGGAAGTCCACCCTGCT
ATTGCAGGTATCCACTCAGCTTTCTCATCAGGGCACCGTTCTCTATGTCAGCGGGGAGGAATCAGCTGAGCAGATTAAGC
TGCGGGCGGAACGCCTCGGTGATATTGACAGTGAATTTTATCTCTACGCCGAGACCAATATGCAAAATATCCGCACAGAG
ATTGAAAAGATTAAGCCGGATTTTCTGATTATTGACTCCATTCAGACAGTTATGTCGCCGGAAATTTCCAGTGTCCAAGG
CTCCGTCTCTCAAGTCCGAGAGGTGACAGCCGAGCTCATGCAGCTGGCCAAGACCAATAATATCGCGACCTTTATCGTTG
GTCACATGACCAAGGAAGGAACCTTAGCTGGTCCTCGAACGCTAGAGCACATGGTGGATACCGTGCTTTATTTTGAGGGC
GAACGTCAGCACACTTTCCGTATCTTGAGAGCAGTCAAGAACCGCTTTGGCTCAACCAATGAGATTGGTATTTTTGAGAT
GCAATCTGGCGGGCTAGTTGAGGTTGTCAATCCAAGTGAAGTCTTTCTGGAAGAGCGTCTGGACGGCGCGACAGGTTCAT
CTATCGTCGTGACTATGGAAGGAACGCGGCCGATTTTGGCAGAGGTGCAGGCTTTGGTGACACCGACCATGTTTGGCAAT
GCCAAGCGAACCACGACTGGACTGGACTTTAACCGAGCCAGCCTTATCATGGCGGTTCTGGAAAAACGGGCAGGGCTCCT
CCTGCAAAATCAAGACGCCTACCTCAAATCAGCTGGTGGTGTCAAGCTAGATGAGCCAGCCATTGATTTGGCAGTAGCGG
TCGCCATTGCTTCCAGCTACAAGGATCTGCCTACCAATCCTCAAGAGTGCTTTATCGGTGAAATTGGCCTGACTGGAGAA
ATTCGCCGGGTTAATCGCATCGAGCAGCGCATCAACGAAGCAGCAAAGCTGGGCTTCACTAAAGTCTACGTTCCTAAAAA
CTCTCTGAACGGCCTCAAAGTTCCAGACAATATCCAAGTCATTGGTGTGACGACGATTGGGGAAGTTTTAAAGAAGGTAT
TTTCTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Streptococcus mitis NCTC 12261 |
91.611 |
99.56 |
0.912 |
| radA | Streptococcus pneumoniae D39 |
91.391 |
99.56 |
0.91 |
| radA | Streptococcus pneumoniae R6 |
91.391 |
99.56 |
0.91 |
| radA | Streptococcus pneumoniae Rx1 |
91.391 |
99.56 |
0.91 |
| radA | Streptococcus mitis SK321 |
91.391 |
99.56 |
0.91 |
| radA | Streptococcus pneumoniae TIGR4 |
91.391 |
99.56 |
0.91 |
| radA | Bacillus subtilis subsp. subtilis str. 168 |
62.252 |
99.56 |
0.62 |