Detailed information
Bioinformatically predicted
Overview
| Name | comP | Type | Machinery gene |
| Locus tag | RRV97_RS10655 | Genome accession | NZ_CP135440 |
| Coordinates | 2238763..2239257 (+) | Length | 164 a.a. |
| NCBI ID | WP_315611430.1 | Uniprot ID | A0AA96NAX6 |
| Organism | Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055 | ||
| Function | DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology) DNA binding and uptake |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2238805..2277513 | 2238763..2239257 | flank | -452 |
Gene organization within MGE regions
Location: 2238763..2277513
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RRV97_RS10655 (RRV97_10655) | comP | 2238763..2239257 (+) | 495 | WP_315611430.1 | type IV pilin protein | Machinery gene |
| RRV97_RS10660 (RRV97_10660) | uvrB | 2239406..2241433 (+) | 2028 | WP_315611492.1 | excinuclease ABC subunit UvrB | - |
| RRV97_RS10665 (RRV97_10665) | - | 2241793..2242446 (+) | 654 | WP_315611493.1 | IS1595 family transposase | - |
| RRV97_RS10670 (RRV97_10670) | - | 2242496..2243644 (+) | 1149 | WP_315611494.1 | hypothetical protein | - |
| RRV97_RS10675 (RRV97_10675) | - | 2243691..2243954 (+) | 264 | WP_296117867.1 | PAAR domain-containing protein | - |
| RRV97_RS10680 (RRV97_10680) | tssC | 2244007..2245542 (-) | 1536 | WP_188208735.1 | type VI secretion system contractile sheath large subunit | - |
| RRV97_RS10685 (RRV97_10685) | tssB | 2245581..2246081 (-) | 501 | WP_070589491.1 | type VI secretion system contractile sheath small subunit | - |
| RRV97_RS10690 (RRV97_10690) | tssK | 2246241..2247587 (+) | 1347 | WP_315611495.1 | type VI secretion system baseplate subunit TssK | - |
| RRV97_RS10695 (RRV97_10695) | - | 2247589..2248251 (+) | 663 | WP_101756361.1 | DotU family type IV/VI secretion system protein | - |
| RRV97_RS10700 (RRV97_10700) | - | 2248269..2249903 (+) | 1635 | WP_315611496.1 | OmpA family protein | - |
| RRV97_RS10705 (RRV97_10705) | - | 2249974..2250462 (+) | 489 | WP_107858381.1 | Hcp family type VI secretion system effector | - |
| RRV97_RS10710 (RRV97_10710) | tssH | 2250534..2253353 (+) | 2820 | WP_315611497.1 | type VI secretion system ATPase TssH | - |
| RRV97_RS10715 (RRV97_10715) | - | 2253497..2255848 (+) | 2352 | WP_315611498.1 | type VI secretion system tip protein VgrG | - |
| RRV97_RS10720 (RRV97_10720) | - | 2255848..2256621 (+) | 774 | WP_315611499.1 | hypothetical protein | - |
| RRV97_RS10725 (RRV97_10725) | - | 2256669..2257163 (+) | 495 | WP_128580293.1 | DUF3304 domain-containing protein | - |
| RRV97_RS10730 (RRV97_10730) | - | 2257209..2257841 (+) | 633 | WP_315611500.1 | hypothetical protein | - |
| RRV97_RS10735 (RRV97_10735) | - | 2257891..2259219 (+) | 1329 | WP_315611501.1 | phospholipase effector Tle1 domain-containing protein | - |
| RRV97_RS10740 (RRV97_10740) | - | 2259301..2260530 (+) | 1230 | WP_315611502.1 | hypothetical protein | - |
| RRV97_RS10745 (RRV97_10745) | - | 2260999..2262474 (-) | 1476 | WP_315612262.1 | surface lipoprotein assembly modifier | - |
| RRV97_RS10750 (RRV97_10750) | - | 2262631..2263002 (-) | 372 | WP_036492581.1 | hypothetical protein | - |
| RRV97_RS10755 (RRV97_10755) | - | 2263174..2263869 (-) | 696 | WP_315611503.1 | M48 family metallopeptidase | - |
| RRV97_RS10760 (RRV97_10760) | - | 2263919..2264650 (-) | 732 | WP_315611504.1 | lysophospholipid acyltransferase family protein | - |
| RRV97_RS10765 (RRV97_10765) | gmhB | 2264726..2265304 (-) | 579 | WP_003749152.1 | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | - |
| RRV97_RS10770 (RRV97_10770) | - | 2265316..2265768 (-) | 453 | WP_315611505.1 | cell surface protein | - |
| RRV97_RS10775 (RRV97_10775) | - | 2265862..2267103 (-) | 1242 | WP_315611506.1 | aromatic amino acid transporter | - |
| RRV97_RS10780 (RRV97_10780) | - | 2267313..2268317 (+) | 1005 | WP_315611507.1 | DUF6236 family protein | - |
| RRV97_RS10785 (RRV97_10785) | - | 2268384..2269457 (-) | 1074 | WP_315611508.1 | AI-2E family transporter | - |
| RRV97_RS10790 (RRV97_10790) | folD | 2269542..2270393 (-) | 852 | WP_188212325.1 | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD | - |
| RRV97_RS10810 (RRV97_10810) | - | 2271122..2271628 (+) | 507 | WP_107723979.1 | adenylyltransferase/cytidyltransferase family protein | - |
| RRV97_RS10815 (RRV97_10815) | - | 2271625..2273385 (+) | 1761 | WP_315611509.1 | bifunctional biotin--[acetyl-CoA-carboxylase] ligase/type III pantothenate kinase | - |
| RRV97_RS10820 (RRV97_10820) | - | 2273401..2274243 (+) | 843 | WP_004520957.1 | hypothetical protein | - |
| RRV97_RS10825 (RRV97_10825) | - | 2274772..2275290 (-) | 519 | WP_315611510.1 | DUF4189 domain-containing protein | - |
| RRV97_RS10830 (RRV97_10830) | tldD | 2275556..2276998 (+) | 1443 | WP_315611511.1 | metalloprotease TldD | - |
| RRV97_RS10835 (RRV97_10835) | - | 2277052..2277513 (+) | 462 | WP_315611512.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 164 a.a. Molecular weight: 18022.10 Da Isoelectric Point: 10.0610
>NTDB_id=886653 RRV97_RS10655 WP_315611430.1 2238763..2239257(+) (comP) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
MYLKAFDGKRNGATVQRGYSLVQLLVVMLLVSILAMTAFTAYRESVRSANLRAAHAALLENARFMEQFYAKKGSFKLTST
KWPELPVKEAGGFCIRMSGQAKGILEGKFTLKAVALDREAEPRVLRLNESLTAVVCGKMKGKGSCTDGEEIFRGNDAECK
PFMG
MYLKAFDGKRNGATVQRGYSLVQLLVVMLLVSILAMTAFTAYRESVRSANLRAAHAALLENARFMEQFYAKKGSFKLTST
KWPELPVKEAGGFCIRMSGQAKGILEGKFTLKAVALDREAEPRVLRLNESLTAVVCGKMKGKGSCTDGEEIFRGNDAECK
PFMG
Nucleotide
Download Length: 495 bp
>NTDB_id=886653 RRV97_RS10655 WP_315611430.1 2238763..2239257(+) (comP) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
ATGTACTTAAAAGCATTTGACGGAAAACGGAATGGAGCAACTGTGCAGAGGGGGTATTCTTTGGTACAGCTGTTGGTGGT
GATGCTGCTGGTTTCGATCTTGGCGATGACGGCCTTTACGGCCTATCGGGAATCGGTCCGCTCGGCCAACCTGCGTGCGG
CGCATGCCGCGCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTACGCGAAAAAGGGCAGCTTTAAGCTGACGTCGACG
AAGTGGCCGGAATTGCCGGTGAAGGAGGCGGGCGGTTTCTGTATCAGGATGAGCGGTCAGGCTAAGGGGATTCTGGAGGG
TAAGTTTACCTTGAAGGCGGTGGCGCTGGACAGGGAGGCGGAGCCGAGGGTGCTGCGCTTGAACGAGTCGTTGACGGCGG
TGGTGTGCGGGAAGATGAAGGGGAAGGGCAGTTGTACGGACGGCGAGGAGATATTTAGGGGTAATGATGCGGAGTGTAAG
CCTTTTATGGGGTAG
ATGTACTTAAAAGCATTTGACGGAAAACGGAATGGAGCAACTGTGCAGAGGGGGTATTCTTTGGTACAGCTGTTGGTGGT
GATGCTGCTGGTTTCGATCTTGGCGATGACGGCCTTTACGGCCTATCGGGAATCGGTCCGCTCGGCCAACCTGCGTGCGG
CGCATGCCGCGCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTACGCGAAAAAGGGCAGCTTTAAGCTGACGTCGACG
AAGTGGCCGGAATTGCCGGTGAAGGAGGCGGGCGGTTTCTGTATCAGGATGAGCGGTCAGGCTAAGGGGATTCTGGAGGG
TAAGTTTACCTTGAAGGCGGTGGCGCTGGACAGGGAGGCGGAGCCGAGGGTGCTGCGCTTGAACGAGTCGTTGACGGCGG
TGGTGTGCGGGAAGATGAAGGGGAAGGGCAGTTGTACGGACGGCGAGGAGATATTTAGGGGTAATGATGCGGAGTGTAAG
CCTTTTATGGGGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comP | Neisseria subflava NJ9703 |
93.902 |
100 |
0.939 |
| comP | Neisseria meningitidis 8013 |
51.007 |
90.854 |
0.463 |
| comP | Neisseria gonorrhoeae MS11 |
51.02 |
89.634 |
0.457 |