Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   RRV97_RS04320 Genome accession   NZ_CP135440
Coordinates   936577..937062 (+) Length   161 a.a.
NCBI ID   WP_315612083.1    Uniprot ID   A0AA96NE95
Organism   Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 931577..942062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV97_RS04295 (RRV97_04295) dnaB 932202..933608 (+) 1407 WP_036490624.1 replicative DNA helicase -
  RRV97_RS04300 (RRV97_04300) - 933768..934460 (+) 693 WP_315612080.1 Tfp pilus assembly protein FimT/FimU -
  RRV97_RS04305 (RRV97_04305) pilV 934457..935122 (+) 666 WP_314594956.1 type IV pilus modification protein PilV -
  RRV97_RS04310 (RRV97_04310) pilJ 935125..936060 (+) 936 WP_315612081.1 pilus assembly protein PilW Machinery gene
  RRV97_RS04315 (RRV97_04315) pilK 936039..936572 (+) 534 WP_315612082.1 pilus assembly protein Machinery gene
  RRV97_RS04320 (RRV97_04320) pilL 936577..937062 (+) 486 WP_315612083.1 PilX family type IV pilin Machinery gene
  RRV97_RS04325 (RRV97_04325) - 937113..937733 (-) 621 WP_107723136.1 Smr/MutS family protein -
  RRV97_RS04330 (RRV97_04330) - 937869..938246 (+) 378 WP_315612084.1 hypothetical protein -
  RRV97_RS04335 (RRV97_04335) trpE 938382..939857 (+) 1476 WP_315612085.1 anthranilate synthase component I -
  RRV97_RS04340 (RRV97_04340) - 939901..940470 (+) 570 WP_315612086.1 RNA 2'-phosphotransferase -
  RRV97_RS04345 (RRV97_04345) - 940553..941689 (+) 1137 WP_315612087.1 5-(carboxyamino)imidazole ribonucleotide synthase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 18008.67 Da        Isoelectric Point: 9.7209

>NTDB_id=886630 RRV97_RS04320 WP_315612083.1 936577..937062(+) (pilL) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
MNTTSTQQLGFTLVEMMIAVAILAILSVIAIPSYNRYIERGYQSQAHAELVAINSAFKNQMVKNPKWKTDEIKTKLDDFI
SSYKGHKDLADKYKYSAEMIDTSTRAYRLKAIPTKTGYTLSVWMDSLGNAYKCTDMDSAKDSKTTMTNGKGCESVSKKKS
S

Nucleotide


Download         Length: 486 bp        

>NTDB_id=886630 RRV97_RS04320 WP_315612083.1 936577..937062(+) (pilL) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
ATGAATACCACCTCTACCCAACAACTAGGCTTTACTCTGGTTGAGATGATGATTGCCGTCGCCATCTTAGCCATCCTGAG
CGTCATTGCTATTCCCTCTTACAACCGCTACATTGAACGCGGCTACCAATCACAAGCGCATGCCGAGTTAGTCGCCATCA
ATTCTGCTTTTAAAAACCAGATGGTTAAAAATCCAAAGTGGAAAACTGATGAGATTAAAACCAAGTTGGATGACTTTATT
TCCTCATATAAAGGCCATAAAGATTTGGCAGATAAATACAAATACTCTGCCGAAATGATTGATACCAGTACAAGAGCCTA
TCGTTTGAAAGCCATTCCCACAAAAACAGGCTACACCCTTTCCGTTTGGATGGATAGCTTGGGCAATGCTTACAAATGCA
CTGATATGGATTCCGCCAAAGATTCTAAAACCACAATGACTAATGGAAAAGGTTGCGAATCGGTTTCCAAAAAGAAATCT
TCTTAG

Domains

Predicted by InterproScan.

Minor type IV pilin, PilX (Pilin_PilX)

(37-159)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

51.613

96.273

0.497
  pilX Neisseria meningitidis 8013

50.968

96.273

0.491