Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   RRV97_RS04315 Genome accession   NZ_CP135440
Coordinates   936039..936572 (+) Length   177 a.a.
NCBI ID   WP_315612082.1    Uniprot ID   A0AA96NH48
Organism   Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 931039..941572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV97_RS04290 (RRV97_04290) - 931466..932047 (-) 582 WP_003683473.1 superoxide dismutase -
  RRV97_RS04295 (RRV97_04295) dnaB 932202..933608 (+) 1407 WP_036490624.1 replicative DNA helicase -
  RRV97_RS04300 (RRV97_04300) - 933768..934460 (+) 693 WP_315612080.1 Tfp pilus assembly protein FimT/FimU -
  RRV97_RS04305 (RRV97_04305) pilV 934457..935122 (+) 666 WP_314594956.1 type IV pilus modification protein PilV -
  RRV97_RS04310 (RRV97_04310) pilJ 935125..936060 (+) 936 WP_315612081.1 pilus assembly protein PilW Machinery gene
  RRV97_RS04315 (RRV97_04315) pilK 936039..936572 (+) 534 WP_315612082.1 pilus assembly protein Machinery gene
  RRV97_RS04320 (RRV97_04320) pilL 936577..937062 (+) 486 WP_315612083.1 PilX family type IV pilin Machinery gene
  RRV97_RS04325 (RRV97_04325) - 937113..937733 (-) 621 WP_107723136.1 Smr/MutS family protein -
  RRV97_RS04330 (RRV97_04330) - 937869..938246 (+) 378 WP_315612084.1 hypothetical protein -
  RRV97_RS04335 (RRV97_04335) trpE 938382..939857 (+) 1476 WP_315612085.1 anthranilate synthase component I -
  RRV97_RS04340 (RRV97_04340) - 939901..940470 (+) 570 WP_315612086.1 RNA 2'-phosphotransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19916.67 Da        Isoelectric Point: 9.0953

>NTDB_id=886629 RRV97_RS04315 WP_315612082.1 936039..936572(+) (pilK) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
MRRPITLIKPDRQQGYALFIVLMMMVVIALLVVTATQSYNTEQRISTNDADRKFATTLAEAALRKGENQIFDIEGKKTTF
TAKCEKGLCSTPNVKSNGDFTEEGNPTEDAWKRKCDKSLCIDVNGERYSQGENSPRFIIEYLGTNSADKRTIYRVTAKAW
GKNKNTQVVLQSYVASE

Nucleotide


Download         Length: 534 bp        

>NTDB_id=886629 RRV97_RS04315 WP_315612082.1 936039..936572(+) (pilK) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
ATGCGCCGACCGATCACTCTAATCAAACCTGACCGGCAGCAGGGCTATGCTTTGTTTATCGTCTTAATGATGATGGTCGT
CATCGCACTGCTCGTGGTCACAGCCACCCAGTCCTACAATACCGAACAGCGTATCAGCACCAACGATGCCGACCGCAAAT
TTGCAACCACCCTAGCCGAAGCGGCATTGCGTAAGGGTGAGAATCAAATTTTTGATATTGAAGGTAAAAAGACTACTTTT
ACCGCAAAATGTGAAAAAGGTTTATGTTCCACACCAAACGTCAAATCCAATGGCGATTTTACTGAAGAAGGCAACCCAAC
CGAAGATGCTTGGAAGCGCAAATGCGACAAAAGCCTGTGTATTGATGTCAACGGCGAAAGATATTCTCAAGGTGAAAATA
GTCCACGCTTCATCATCGAATATCTAGGCACTAACTCTGCCGACAAACGTACTATTTACCGCGTTACAGCCAAAGCATGG
GGGAAGAATAAAAATACACAGGTCGTCCTTCAATCTTACGTTGCCAGCGAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(14-64)

Type IV pilus assembly protein PilX C-term (PilX)

(101-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

52.736

100

0.599