Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   RRV97_RS00400 Genome accession   NZ_CP135440
Coordinates   93006..93293 (+) Length   95 a.a.
NCBI ID   WP_049323884.1    Uniprot ID   A0AA96SE73
Organism   Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 93371..94378 93006..93293 flank 78


Gene organization within MGE regions


Location: 93006..94378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV97_RS00400 (RRV97_00400) comE 93006..93293 (+) 288 WP_049323884.1 ComEA family DNA-binding protein Machinery gene
  RRV97_RS00405 (RRV97_00405) - 93371..94378 (+) 1008 WP_315611624.1 IS5 family transposase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9743.43 Da        Isoelectric Point: 10.4923

>NTDB_id=886615 RRV97_RS00400 WP_049323884.1 93006..93293(+) (comE) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
MKKFLFGVVAAVCTAFSLAAVNVNTASSAELEALPGIGPAKAKAIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=886615 RRV97_RS00400 WP_049323884.1 93006..93293(+) (comE) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
ATGAAGAAATTTTTATTTGGTGTAGTTGCCGCCGTTTGTACGGCGTTCTCTTTGGCTGCCGTGAACGTCAATACGGCCTC
TTCTGCGGAACTGGAGGCATTGCCGGGTATCGGCCCGGCTAAGGCGAAGGCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCCGCCCAACCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.659

86.316

0.463