Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   RRU92_RS09625 Genome accession   NZ_CP135436
Coordinates   2012227..2014185 (-) Length   652 a.a.
NCBI ID   WP_315639640.1    Uniprot ID   A0AA96MPB2
Organism   Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2007227..2019185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRU92_RS09615 (RRU92_09615) - 2009816..2010982 (-) 1167 WP_315639635.1 MalY/PatB family protein -
  RRU92_RS09620 (RRU92_09620) - 2010987..2012081 (-) 1095 WP_315639637.1 cystathionine gamma-synthase -
  RRU92_RS09625 (RRU92_09625) amiA 2012227..2014185 (-) 1959 WP_315639640.1 peptide ABC transporter substrate-binding protein Regulator
  RRU92_RS09630 (RRU92_09630) - 2014376..2015998 (-) 1623 WP_315639641.1 polysaccharide biosynthesis protein -
  RRU92_RS09635 (RRU92_09635) - 2016102..2017547 (+) 1446 WP_315639642.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  RRU92_RS09640 (RRU92_09640) - 2017582..2018232 (-) 651 WP_315639643.1 DUF1803 domain-containing protein -
  RRU92_RS09645 (RRU92_09645) - 2018216..2018728 (-) 513 WP_315639647.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72720.80 Da        Isoelectric Point: 4.7303

>NTDB_id=886563 RRU92_RS09625 WP_315639640.1 2012227..2014185(-) (amiA) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
MKKSKAKYLTLAGLALSAGLLLAACSNSASSTKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWSVSQDGLTYTYKLRKDAKWYTSEGEEYAPVTAQDFVTGLKYAADKKSEALYLVQDSVAGLDDYINGKTSDFSTVGV
KALDDQTVQYTLTRPESYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYNGPFLMKSFVSKSVIEFKKNPNYWDEK
NVFVDDVKLAYYDGSDQDALARNFVEGVYSYARLYPNSSSFEGIKEKNKDNIIYSMQNATSYYLNFNLDRKSYNFTSKSS
DIEKKSTQEAVLNKNFRQAFNYAYNRTAYGAQSQGEDGATKIIRNLVVPPTFVTINGKDFGDVVSEKMVNYGQEWQGINF
ADAQDPYYNPDKAKAKFAEAKKELEAKGVQFPIHLDVSVDQSAKKGVLEASSLKQSIESVLGAENVVIDIQQLSTDDFDN
SSYLAQTAAQKDFDIYNGGWSADYLDPSSYLDILNVNNGGMLQNIGLEPGEVNDKAKAVGLDTYTQMLEDANKEQEPAKR
YEKYAEVQAWLVDSALAIPNVSKGGTPTLRKTVPFSAAFSQAGNKGVESYKYVKLQDKIVTTAEYEEARQKWLKEKEESN
KKAQEDFAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=886563 RRU92_RS09625 WP_315639640.1 2012227..2014185(-) (amiA) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
ATGAAAAAGTCTAAGGCAAAATATCTGACGCTGGCAGGCCTTGCCCTAAGTGCTGGTCTACTATTGGCGGCTTGTAGCAA
CTCAGCTAGTTCAACTAAAACATACAACTATGTCTATTCTAGCGATCCGTCTAGTTTGAACTATCTTGCAGAAAACCGTG
CAACAACCAATGACATCGTTACCAATTTGGTAGATGGGTTGATGGAAAATGACCAATACGGTAACTACGTTCCATCCTTA
GCAGAGGATTGGAGTGTTTCTCAGGACGGTTTGACATACACTTATAAACTTCGTAAAGATGCTAAGTGGTATACCTCTGA
AGGTGAAGAATATGCTCCAGTAACTGCCCAAGATTTTGTAACTGGTTTGAAATATGCTGCTGATAAAAAATCCGAAGCTT
TGTACCTGGTTCAAGATTCTGTAGCAGGTTTGGATGACTATATCAACGGGAAAACAAGCGACTTTTCAACTGTCGGAGTC
AAGGCTCTTGATGACCAAACAGTTCAGTACACTTTGACACGACCAGAATCTTATTGGAATTCTAAAACAACATCAACCAT
TCTCTTCCCTGTCAATGCAGACTTCCTGAAATCAAAAGGGGATGATTTTGGTAAGGTGGATCCTTCTAGTATTTTGTACA
ATGGACCTTTCTTGATGAAATCCTTTGTTTCAAAATCTGTCATCGAATTCAAGAAAAATCCGAACTACTGGGATGAAAAA
AATGTCTTTGTAGATGATGTGAAATTGGCCTATTATGATGGTAGTGACCAAGATGCACTAGCTCGTAACTTTGTAGAAGG
AGTCTACAGCTACGCACGTCTTTATCCAAATAGCTCAAGCTTTGAAGGAATTAAAGAGAAGAACAAGGATAACATCATCT
ATAGTATGCAAAATGCAACTTCTTATTACTTGAACTTCAACTTGGACAGAAAATCTTATAACTTCACGTCTAAGTCCTCA
GATATCGAAAAGAAATCAACTCAAGAAGCAGTTCTGAATAAAAACTTCCGTCAAGCCTTCAACTATGCATACAACCGTAC
AGCCTATGGAGCACAATCTCAAGGGGAGGACGGAGCAACGAAGATTATTCGTAACCTAGTTGTACCCCCTACATTTGTAA
CCATCAACGGAAAAGACTTTGGCGATGTTGTTTCAGAAAAGATGGTCAACTATGGCCAAGAATGGCAAGGAATCAACTTT
GCAGATGCACAAGACCCATACTACAATCCTGATAAAGCTAAGGCTAAATTTGCGGAAGCCAAGAAAGAATTGGAAGCTAA
GGGTGTGCAATTCCCAATCCACTTGGATGTATCAGTTGACCAATCAGCTAAAAAAGGTGTACTTGAAGCAAGCTCTTTGA
AACAATCCATCGAATCTGTTCTAGGAGCTGAGAATGTGGTTATCGATATCCAACAGCTATCAACAGATGACTTTGACAAC
TCTAGCTACCTAGCTCAAACTGCAGCTCAAAAAGACTTTGATATCTATAATGGCGGTTGGAGTGCGGACTACTTGGATCC
ATCAAGCTATTTAGATATCCTAAATGTCAATAACGGTGGTATGTTGCAAAACATTGGTCTAGAACCAGGTGAGGTCAATG
ACAAGGCTAAGGCAGTTGGTCTGGATACTTACACTCAAATGTTAGAAGATGCTAACAAGGAGCAAGAACCAGCGAAACGT
TATGAAAAATATGCTGAAGTTCAAGCTTGGCTCGTTGATAGCGCCCTTGCAATTCCAAACGTTTCTAAAGGTGGAACACC
TACATTGAGAAAAACAGTTCCATTCTCTGCCGCCTTCTCTCAAGCTGGTAATAAGGGTGTTGAATCCTACAAATACGTGA
AATTGCAAGATAAGATTGTCACAACAGCTGAGTATGAAGAAGCTAGACAAAAATGGCTGAAAGAAAAAGAAGAATCTAAT
AAAAAAGCCCAAGAAGATTTTGCTAAACACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.143

100

0.577
  amiA3 Streptococcus thermophilus LMG 18311

56.904

100

0.575
  amiA3 Streptococcus thermophilus LMD-9

56.601

100

0.572