Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RRU92_RS05970 Genome accession   NZ_CP135436
Coordinates   1237228..1239195 (+) Length   655 a.a.
NCBI ID   WP_315638942.1    Uniprot ID   A0AA96MPF7
Organism   Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1232228..1244195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRU92_RS05960 (RRU92_05960) - 1233954..1236041 (+) 2088 WP_315638940.1 thiol-activated cytolysin family protein -
  RRU92_RS05965 (RRU92_05965) - 1236184..1237206 (+) 1023 WP_315638941.1 branched-chain amino acid aminotransferase -
  RRU92_RS05970 (RRU92_05970) amiA3 1237228..1239195 (+) 1968 WP_315638942.1 peptide ABC transporter substrate-binding protein Regulator
  RRU92_RS05975 (RRU92_05975) - 1239230..1239919 (+) 690 WP_315638944.1 DUF969 domain-containing protein -
  RRU92_RS05980 (RRU92_05980) - 1239916..1240839 (+) 924 WP_248034923.1 DUF979 domain-containing protein -
  RRU92_RS05985 (RRU92_05985) pcp 1240853..1241497 (+) 645 WP_248034921.1 pyroglutamyl-peptidase I -
  RRU92_RS05990 (RRU92_05990) - 1241633..1241863 (+) 231 WP_000037108.1 DUF2969 domain-containing protein -
  RRU92_RS06005 (RRU92_06005) rpsA 1242236..1243438 (+) 1203 WP_001001618.1 30S ribosomal protein S1 -
  RRU92_RS06010 (RRU92_06010) - 1243524..1244021 (+) 498 WP_248034918.1 GAF domain-containing protein -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72809.41 Da        Isoelectric Point: 5.1245

>NTDB_id=886547 RRU92_RS05970 WP_315638942.1 1237228..1239195(+) (amiA3) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
MKTKKWMLTAGVVLSTAVLLVACGKADKEADAPTTFSYVYGVDPSSLDYSIATRTSTTDIIGNVVDGLLENDEYGNLIPS
LAEDWSVSQDGLTYTYKLRKGVKWYTSEGEEYAEVTAHDFVTGLKHVADGKSDGVTLIQNSIKGLNEYMTGETNDFSTVG
VKAVDDYTVEYTLNAPETFWNSKVTSATMLPVNEEFLKASGKNYGTVSPAGILYNGPYILKTLTSKSLIEYEKNPNYWDK
EKVKIEKVKLTYYDGSDQESLIRSFSSGVYTTARLFPSSSNFASTLEQYGDKITYSPQDSTSYYFTFNVNRQSFNKTAKT
SEEQKTSTKEAMLNKDFRQAINFAFNRHSYAAQLNGEDGADKIIRNSLVPDNFVQSGGKNFGDIAQKELINYGDQWKGVE
LVDGKDTIYNPDKAKASFEKAKKELESKGVTFPIHLDVPVEQTNTIAVQQSNSFKQSIESTLGSENVVIDVLQMTDNEKE
SITSQARVPAQKDYDLNSTGWAPSYQDPASYLNIMDPKTGSAMKHLGITKGKDKEVVAQLGLDQYKKLLDDAVSETNDLN
KRYEKYAKAQAWLTDSSLLIPTASSGGSPVVSNIVPFSKPYSQVGIKGDPYIFKGMKLQKEIVSAKEYQAALEKWQKEKL
ESNNKYQKELESHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=886547 RRU92_RS05970 WP_315638942.1 1237228..1239195(+) (amiA3) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
ATGAAAACGAAAAAGTGGATGTTAACAGCAGGAGTGGTCCTGAGTACAGCAGTTCTTCTTGTGGCTTGTGGGAAAGCTGA
CAAGGAAGCAGATGCGCCTACAACTTTCTCTTATGTCTATGGAGTAGACCCATCATCTTTGGACTACAGTATCGCAACTC
GTACTTCAACAACTGATATCATCGGTAACGTCGTTGATGGTTTGTTGGAAAACGATGAATATGGGAATTTGATTCCTTCC
CTTGCTGAGGATTGGAGTGTCTCACAAGACGGTTTGACTTATACTTATAAACTTCGTAAAGGGGTTAAATGGTATACTTC
AGAAGGTGAAGAATACGCTGAAGTAACTGCGCATGACTTTGTTACAGGGTTGAAACACGTAGCAGATGGCAAATCAGACG
GTGTCACTCTTATTCAAAACTCAATCAAGGGCTTGAATGAATATATGACTGGTGAGACTAATGATTTCTCAACAGTTGGG
GTTAAGGCAGTAGATGACTATACTGTTGAGTACACTCTAAATGCACCTGAAACTTTCTGGAATTCCAAAGTAACTTCAGC
AACTATGTTGCCAGTAAATGAAGAATTCCTCAAAGCTTCTGGTAAAAATTATGGAACGGTCAGTCCAGCTGGTATTCTTT
ATAACGGTCCATATATTTTGAAGACATTGACTTCAAAATCTTTAATCGAATATGAAAAGAACCCAAATTATTGGGATAAA
GAGAAGGTTAAAATCGAGAAAGTTAAATTAACTTACTATGATGGATCAGACCAAGAATCCTTGATCCGTAGCTTCTCTTC
GGGTGTTTACACAACAGCTCGCCTCTTCCCAAGTAGCTCAAACTTTGCTTCTACTTTGGAACAATACGGGGATAAAATTA
CATATAGTCCACAGGATTCAACTAGTTACTACTTTACCTTTAATGTAAACCGTCAATCTTTCAATAAGACAGCGAAAACA
AGTGAAGAACAGAAAACTTCTACAAAAGAAGCAATGTTGAACAAGGACTTCCGTCAAGCCATCAACTTTGCCTTCAACCG
TCATTCTTATGCTGCCCAGCTCAATGGTGAAGATGGTGCGGACAAGATTATTCGTAATAGCTTAGTACCAGATAACTTTG
TACAATCTGGTGGTAAAAACTTTGGTGATATTGCTCAAAAAGAATTGATCAACTATGGAGACCAATGGAAAGGTGTTGAG
CTTGTAGACGGAAAAGATACCATCTACAATCCTGACAAAGCCAAGGCTTCATTTGAAAAAGCTAAGAAAGAATTGGAATC
AAAAGGTGTAACCTTCCCAATTCACTTGGATGTCCCAGTTGAACAGACAAATACAATTGCTGTTCAGCAAAGCAATTCCT
TCAAGCAATCAATCGAATCAACTCTTGGTTCTGAAAATGTCGTAATCGATGTTCTTCAAATGACTGACAATGAAAAGGAA
AGTATTACATCACAAGCGCGTGTACCTGCTCAAAAAGACTATGATTTGAACAGTACTGGATGGGCTCCAAGTTATCAAGA
TCCGGCAAGTTATCTCAATATCATGGATCCTAAGACCGGTTCTGCTATGAAACACCTTGGTATTACTAAAGGAAAAGATA
AGGAAGTAGTAGCTCAACTTGGTTTGGACCAATATAAGAAACTCTTAGATGATGCAGTTTCTGAGACAAACGACTTGAAC
AAGAGATATGAAAAATATGCTAAAGCCCAAGCTTGGCTCACAGATAGTTCTCTCTTGATACCGACAGCTTCATCAGGTGG
TTCACCTGTTGTTAGCAACATCGTTCCTTTCTCAAAACCATACTCACAAGTAGGTATTAAGGGGGATCCATACATCTTCA
AGGGAATGAAATTGCAAAAAGAGATTGTATCTGCTAAAGAATACCAAGCAGCTCTTGAAAAATGGCAAAAAGAAAAATTG
GAATCAAACAATAAATACCAAAAAGAATTAGAGAGTCATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

52.121

100

0.525
  amiA Streptococcus salivarius strain HSISS4

51.824

100

0.521
  amiA3 Streptococcus thermophilus LMG 18311

51.515

100

0.519