Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   RRU92_RS05120 Genome accession   NZ_CP135436
Coordinates   1033691..1035673 (+) Length   660 a.a.
NCBI ID   WP_311522591.1    Uniprot ID   -
Organism   Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1028691..1040673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRU92_RS05105 (RRU92_05105) - 1029101..1030357 (-) 1257 WP_315640861.1 ISL3 family transposase -
  RRU92_RS05110 (RRU92_05110) - 1030843..1032945 (+) 2103 WP_315640862.1 ATP-dependent Clp protease ATP-binding subunit -
  RRU92_RS05115 (RRU92_05115) - 1033004..1033486 (-) 483 WP_006151868.1 S-ribosylhomocysteine lyase -
  RRU92_RS05120 (RRU92_05120) amiA 1033691..1035673 (+) 1983 WP_311522591.1 peptide ABC transporter substrate-binding protein Regulator
  RRU92_RS05125 (RRU92_05125) pbp1a 1036028..1038190 (-) 2163 WP_315640865.1 penicillin-binding protein PBP1A -
  RRU92_RS05130 (RRU92_05130) recU 1038187..1038783 (-) 597 WP_248034645.1 Holliday junction resolvase RecU -
  RRU92_RS05135 (RRU92_05135) - 1038851..1039378 (+) 528 WP_315640867.1 DUF1273 domain-containing protein -
  RRU92_RS05140 (RRU92_05140) gpsB 1039448..1039777 (+) 330 WP_315640868.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73133.65 Da        Isoelectric Point: 4.6103

>NTDB_id=886540 RRU92_RS05120 WP_311522591.1 1033691..1035673(+) (amiA) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
MKFSKVMALAGVTLLASGVLAACSGSGSSAKGEKTFSYVYETDPDSLNYLTTGKAAVANITSNVVDGLMENDRYGNFVPS
LAEDWSVSKDGLTYTYTIRKDAKWYTSEGEEYAPVKAQDFVTGLKYAADNKSEALYLVQESIKGLDAYVKGEVKDFSEVG
IKAVDDQTVQYTLNKPESFWNSKTTMGILAPVNEEFLTSKGSDFAKATDPSSILYNGPFLLKSLVAKSSVEFEKNPNYWD
KDNVHIDKVKLSFWDGQDNNKLAETFKDGGFSMALLFPTSGSYSELEKEFKDNIVYTTQDSTTFLVGTNIDRQSYKYTSK
TTDEQKTSTKKALLNKDFRQAIAFGFDRTAYASQVNGASGASKLLRNLFVPPTFVQADGKNFGDLVKEKLVTYGDEWKDV
NLEDAQDGLYNPEKAKAEFAKAKTALQAEGVQFPIHLDMPVDQTNTTKVQRVQSLKQSLEATLGTDNVVIDIQQLQKDEV
LNVTYFAETAAGEDWDLSDNVGWSPDYIDPSTYLDIIKPSVGENTKTYLGFDSGTNNAAAKQVGLEDYEKMVVEAGNEDT
DVSKRYDKYAAAQAWLTDSALIIPTTSKTGRPMLSKMVPFTLPFAYSGNKGTSEALLYKYLELQDKPVTVDEYQKAQDKW
KKEKEESNKKAQEDLANHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=886540 RRU92_RS05120 WP_311522591.1 1033691..1035673(+) (amiA) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
ATGAAATTTTCAAAAGTAATGGCCCTAGCAGGGGTGACTCTGTTAGCGTCAGGTGTTTTGGCAGCTTGTTCAGGTTCAGG
CTCTAGTGCAAAAGGTGAGAAAACTTTTTCTTACGTTTATGAAACAGATCCAGACAGCCTCAACTATCTGACAACAGGTA
AGGCTGCGGTTGCGAATATCACAAGTAATGTCGTTGATGGTTTGATGGAGAATGACCGCTACGGTAACTTCGTGCCATCT
TTGGCAGAAGATTGGTCAGTGTCTAAAGACGGGTTGACTTACACTTACACAATCCGTAAAGATGCTAAGTGGTACACTTC
TGAAGGCGAAGAGTATGCACCAGTTAAAGCGCAAGACTTTGTAACAGGTCTTAAGTATGCGGCTGACAATAAGTCAGAAG
CCCTTTATCTTGTTCAAGAATCCATTAAAGGTTTGGATGCTTATGTAAAAGGTGAAGTTAAAGACTTCTCAGAAGTTGGA
ATCAAGGCTGTAGATGATCAAACAGTTCAATACACTTTGAACAAACCAGAAAGCTTCTGGAACTCTAAGACAACCATGGG
AATTCTTGCACCAGTCAATGAAGAATTCCTTACTTCTAAAGGAAGTGACTTTGCTAAAGCAACAGATCCAAGCAGTATCC
TTTATAATGGTCCTTTCTTGTTGAAATCATTGGTAGCAAAATCTTCAGTAGAATTTGAAAAGAATCCAAACTACTGGGAT
AAGGACAATGTTCATATTGATAAAGTAAAACTTTCATTCTGGGATGGTCAAGACAATAACAAACTTGCAGAAACCTTTAA
GGATGGCGGCTTCTCAATGGCCCTTCTCTTCCCAACAAGTGGAAGCTACTCTGAACTTGAAAAAGAGTTTAAGGATAACA
TCGTTTATACAACACAAGATTCTACAACTTTCTTAGTCGGTACGAATATTGACCGTCAGTCTTACAAATATACTTCTAAG
ACTACAGACGAGCAAAAGACTTCAACTAAGAAAGCTCTTCTTAACAAAGACTTCCGTCAAGCCATCGCCTTTGGTTTTGA
TAGAACAGCTTATGCTTCTCAAGTTAATGGAGCAAGTGGAGCAAGCAAACTCCTTCGTAACTTGTTCGTACCACCAACAT
TTGTTCAAGCAGATGGTAAAAACTTTGGTGACTTAGTTAAGGAAAAATTAGTGACCTATGGTGATGAGTGGAAAGATGTT
AATCTAGAAGACGCTCAAGACGGTCTTTACAATCCTGAAAAAGCGAAAGCAGAATTTGCTAAAGCCAAGACAGCACTCCA
AGCGGAAGGTGTTCAATTCCCAATCCACTTGGATATGCCAGTTGACCAAACTAATACTACAAAAGTTCAACGTGTTCAAT
CATTGAAACAATCACTTGAAGCAACGTTAGGAACTGACAATGTTGTCATTGACATTCAACAACTTCAAAAAGATGAAGTC
CTCAATGTTACTTACTTTGCTGAGACGGCTGCCGGTGAAGATTGGGACCTTTCAGATAACGTTGGTTGGTCTCCAGACTA
CATCGACCCATCTACATACCTTGATATCATCAAACCATCAGTAGGTGAAAATACTAAGACTTATCTAGGATTTGATTCAG
GTACAAATAACGCTGCTGCCAAACAAGTTGGTTTGGAAGATTACGAAAAGATGGTTGTTGAAGCTGGAAATGAAGACACT
GACGTTTCAAAACGTTATGATAAATATGCTGCTGCCCAAGCTTGGTTGACAGATAGTGCATTGATTATTCCAACAACTTC
TAAAACTGGACGTCCAATGTTGTCTAAGATGGTGCCATTCACACTTCCATTTGCTTACTCAGGTAACAAGGGAACAAGTG
AAGCACTCTTGTACAAATACCTTGAACTTCAAGATAAACCAGTAACTGTTGATGAATATCAAAAAGCTCAAGATAAATGG
AAGAAAGAAAAAGAAGAATCTAATAAAAAAGCGCAAGAAGATCTTGCAAATCATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.363

100

0.605
  amiA3 Streptococcus thermophilus LMD-9

60.212

100

0.603
  amiA3 Streptococcus thermophilus LMG 18311

59.758

100

0.598