Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   K6J74_RS04620 Genome accession   NZ_AP024819
Coordinates   915941..916753 (+) Length   270 a.a.
NCBI ID   WP_221271140.1    Uniprot ID   -
Organism   Helicobacter sp. NHP19-012     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 910941..921753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J74_RS08575 (NHP190012_09390) - 911207..912091 (-) 885 WP_260321521.1 phosphoenolpyruvate carboxylase -
  K6J74_RS04600 (NHP190012_09400) - 912036..913820 (-) 1785 WP_260321522.1 phosphoenolpyruvate carboxylase -
  K6J74_RS04605 (NHP190012_09410) ilvC 913894..914886 (+) 993 WP_221271137.1 ketol-acid reductoisomerase -
  K6J74_RS04610 (NHP190012_09420) minD 914895..915695 (+) 801 WP_221271138.1 septum site-determining protein MinD -
  K6J74_RS04615 (NHP190012_09430) minE 915692..915940 (+) 249 WP_221271139.1 cell division topological specificity factor MinE -
  K6J74_RS04620 (NHP190012_09440) dprA 915941..916753 (+) 813 WP_221271140.1 DNA-processing protein DprA Machinery gene
  K6J74_RS04625 (NHP190012_09450) dprB 916750..917142 (+) 393 WP_221271141.1 Holliday junction resolvase RuvX Machinery gene
  K6J74_RS04630 (NHP190012_09460) - 917124..917846 (-) 723 WP_221271142.1 YebC/PmpR family DNA-binding transcriptional regulator -
  K6J74_RS04635 (NHP190012_09470) hemB 917846..918814 (-) 969 WP_221271143.1 porphobilinogen synthase -
  K6J74_RS04640 (NHP190012_09480) - 918807..920006 (-) 1200 WP_221271144.1 phosphoribosyltransferase family protein -
  K6J74_RS04645 (NHP190012_09490) - 920006..921277 (-) 1272 WP_221271145.1 ArsS family sensor histidine kinase -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 29679.51 Da        Isoelectric Point: 7.7897

>NTDB_id=88600 K6J74_RS04620 WP_221271140.1 915941..916753(+) (dprA) [Helicobacter sp. NHP19-012]
MQSHFTPKPLDFLPLSFKALKNPPKLLHYVGELRHLQAPLKVALVGTRKPTTYTQQCTATLARELAKIGAVVISGGALGV
DIIAQKNALPATIMLAPCSLERIYPPSNAQVIKEIAKEGLILSEYTKDLQPHRYTFLERNRLVIALSDVVVIPEAQENSG
SMASARLAQELNKPLFVLPQRLFESPGTNALLAQNKAQAIYDIVEFVGDLARDFGLSLPVAKTQSTNTDFLEFCQKSPSF
EEAYAVFGDLLLEQELLGVVKRENGRVVVL

Nucleotide


Download         Length: 813 bp        

>NTDB_id=88600 K6J74_RS04620 WP_221271140.1 915941..916753(+) (dprA) [Helicobacter sp. NHP19-012]
ATGCAAAGCCATTTTACGCCAAAGCCCCTAGACTTCTTGCCTTTAAGTTTTAAAGCCCTAAAAAACCCTCCTAAACTCTT
GCACTATGTGGGGGAGTTAAGGCACTTGCAAGCCCCCTTAAAAGTCGCCCTTGTGGGCACAAGAAAACCCACCACCTACA
CCCAGCAATGCACCGCCACGCTGGCAAGAGAATTAGCCAAAATCGGGGCGGTGGTTATAAGTGGGGGAGCACTAGGCGTA
GACATCATCGCTCAAAAAAACGCCCTACCCGCCACGATCATGCTCGCCCCCTGCTCCTTAGAGCGCATTTACCCACCTAG
CAACGCCCAAGTCATTAAAGAAATTGCCAAAGAGGGGCTGATTTTAAGCGAATACACTAAGGATTTGCAGCCCCACCGCT
ACACCTTTTTAGAGCGCAACCGCTTGGTTATTGCCTTAAGTGATGTCGTCGTTATCCCCGAAGCACAAGAAAACAGCGGG
TCTATGGCGAGTGCAAGATTAGCCCAAGAATTAAACAAGCCCTTATTTGTCCTACCCCAAAGGCTCTTTGAGAGCCCGGG
CACAAATGCTCTTTTAGCGCAAAATAAAGCCCAAGCCATTTACGACATAGTGGAGTTCGTGGGAGATTTAGCTAGGGATT
TTGGCTTAAGCCTACCGGTTGCAAAAACCCAAAGCACAAATACAGACTTTTTAGAGTTTTGCCAAAAGTCCCCTAGCTTT
GAAGAAGCCTATGCGGTGTTTGGGGATTTACTGCTCGAGCAAGAGCTCTTGGGCGTGGTGAAAAGAGAAAACGGGCGAGT
GGTGGTGCTGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(14-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

59.851

99.63

0.596
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.328

97.037

0.459

Multiple sequence alignment