Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   K6J74_RS04625 Genome accession   NZ_AP024819
Coordinates   916750..917142 (+) Length   130 a.a.
NCBI ID   WP_221271141.1    Uniprot ID   -
Organism   Helicobacter sp. NHP19-012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 911750..922142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J74_RS04600 (NHP190012_09400) - 912036..913820 (-) 1785 WP_260321522.1 phosphoenolpyruvate carboxylase -
  K6J74_RS04605 (NHP190012_09410) ilvC 913894..914886 (+) 993 WP_221271137.1 ketol-acid reductoisomerase -
  K6J74_RS04610 (NHP190012_09420) minD 914895..915695 (+) 801 WP_221271138.1 septum site-determining protein MinD -
  K6J74_RS04615 (NHP190012_09430) minE 915692..915940 (+) 249 WP_221271139.1 cell division topological specificity factor MinE -
  K6J74_RS04620 (NHP190012_09440) dprA 915941..916753 (+) 813 WP_221271140.1 DNA-processing protein DprA Machinery gene
  K6J74_RS04625 (NHP190012_09450) dprB 916750..917142 (+) 393 WP_221271141.1 Holliday junction resolvase RuvX Machinery gene
  K6J74_RS04630 (NHP190012_09460) - 917124..917846 (-) 723 WP_221271142.1 YebC/PmpR family DNA-binding transcriptional regulator -
  K6J74_RS04635 (NHP190012_09470) hemB 917846..918814 (-) 969 WP_221271143.1 porphobilinogen synthase -
  K6J74_RS04640 (NHP190012_09480) - 918807..920006 (-) 1200 WP_221271144.1 phosphoribosyltransferase family protein -
  K6J74_RS04645 (NHP190012_09490) - 920006..921277 (-) 1272 WP_221271145.1 ArsS family sensor histidine kinase -
  K6J74_RS04650 (NHP190012_09500) - 921278..921961 (-) 684 WP_221271146.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14642.30 Da        Isoelectric Point: 9.2939

>NTDB_id=88601 K6J74_RS04625 WP_221271141.1 916750..917142(+) (dprB) [Helicobacter sp. NHP19-012]
MILACDIGLKRIGLAMSVQGIILPLEPILRFNRKQASQELQALLDTKKPSCLVVGLPPENYADTRKRILHFVGLLNFAPV
VFVNECNTSLDALEHTHHLKTQKRQKARKDGTLDSLAACEILKRYHEMLV

Nucleotide


Download         Length: 393 bp        

>NTDB_id=88601 K6J74_RS04625 WP_221271141.1 916750..917142(+) (dprB) [Helicobacter sp. NHP19-012]
GTGATTTTGGCGTGCGACATTGGCTTAAAACGCATTGGCTTGGCTATGAGCGTGCAGGGCATTATCTTGCCTTTAGAGCC
GATTTTACGCTTTAATCGTAAACAAGCCAGTCAAGAGTTGCAAGCCCTCTTAGACACCAAAAAGCCTTCTTGCCTTGTGG
TGGGCTTGCCCCCTGAAAACTACGCCGACACACGCAAACGCATTCTGCACTTTGTGGGGCTTTTAAACTTTGCCCCTGTA
GTGTTTGTCAATGAGTGCAACACCAGCCTAGATGCCCTAGAGCACACCCACCACCTCAAGACACAAAAACGCCAAAAAGC
CCGCAAGGACGGCACTCTGGATAGCCTCGCTGCCTGTGAAATCTTAAAACGCTATCACGAAATGTTGGTGTAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

55.556

96.923

0.538

Multiple sequence alignment