Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   QYQ95_RS01285 Genome accession   NZ_CP135176
Coordinates   287646..288278 (-) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio cyclitrophicus ZF270     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 282646..293278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ95_RS01270 (QYQ95_01270) astA 283949..284968 (+) 1020 WP_016767993.1 arginine N-succinyltransferase -
  QYQ95_RS01275 (QYQ95_01275) astD 285008..286465 (+) 1458 WP_016783702.1 succinylglutamate-semialdehyde dehydrogenase -
  QYQ95_RS01280 (QYQ95_01280) - 286677..287468 (+) 792 WP_010435216.1 DUF1338 domain-containing protein -
  QYQ95_RS01285 (QYQ95_01285) crp 287646..288278 (-) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  QYQ95_RS01290 (QYQ95_01290) - 288518..289387 (-) 870 WP_010435210.1 phosphoribulokinase -
  QYQ95_RS01295 (QYQ95_01295) - 289465..289677 (-) 213 WP_010435208.1 YheU family protein -
  QYQ95_RS01300 (QYQ95_01300) - 289769..290776 (-) 1008 WP_010435205.1 hydrolase -
  QYQ95_RS01305 (QYQ95_01305) - 291048..291518 (-) 471 WP_010435202.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=885962 QYQ95_RS01285 WP_004729651.1 287646..288278(-) (crp) [Vibrio cyclitrophicus ZF270]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=885962 QYQ95_RS01285 WP_004729651.1 287646..288278(-) (crp) [Vibrio cyclitrophicus ZF270]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATTGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAGCTAGGCTTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGTGCAAAATCTCCTTGTGAAGTAGCTGAAATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGACATCCTAATGCGTCTATCAGCGCAAATGGCAAACCGTCTACAAGTAACTAGCCAAAAAGTTGGTG
ACTTAGCGTTCCTTGACGTAACTGGTCGTATCGCACAAACGCTACTAAACCTAGCAAAACAACCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGCCAAGAGATTGGCCAGATCGTTGGTTGTTCTCGTGAGACAGTTGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATATGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467