Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   K6J74_RS01530 Genome accession   NZ_AP024819
Coordinates   303103..303660 (-) Length   185 a.a.
NCBI ID   WP_221272169.1    Uniprot ID   -
Organism   Helicobacter sp. NHP19-012     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 298103..308660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J74_RS01505 (NHP190012_03160) folD 298247..299095 (-) 849 WP_221272165.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  K6J74_RS01510 (NHP190012_03170) - 299155..299523 (+) 369 WP_260321635.1 cytochrome c -
  K6J74_RS01515 (NHP190012_03180) thiC 299520..300854 (-) 1335 WP_221272166.1 phosphomethylpyrimidine synthase ThiC -
  K6J74_RS01520 (NHP190012_03190) ispF 301018..302199 (+) 1182 WP_221272167.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  K6J74_RS01525 (NHP190012_03200) - 302192..303106 (+) 915 WP_221272168.1 response regulator -
  K6J74_RS01530 (NHP190012_03210) comFC 303103..303660 (-) 558 WP_221272169.1 phosphoribosyltransferase family protein Machinery gene
  K6J74_RS01535 (NHP190012_03220) - 303662..305257 (-) 1596 WP_221272170.1 methyl-accepting chemotaxis protein -
  K6J74_RS01540 (NHP190012_03230) tsaD 305314..306333 (-) 1020 WP_221272171.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  K6J74_RS01545 (NHP190012_03240) - 306384..307385 (+) 1002 WP_221272172.1 agmatine deiminase family protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20822.47 Da        Isoelectric Point: 9.4946

>NTDB_id=88596 K6J74_RS01530 WP_221272169.1 303103..303660(-) (comFC) [Helicobacter sp. NHP19-012]
MRCFSCGAFSFKLLCKRCYAELAPLLENHRLENTPIYSFYAYDEIEFLLKSKYSLIGSRLLPLLALRVRGLLEPLLQEPL
YALPIDDHIKRGYSHTATIAHALCKNSPCKPVYNKLCATKNITYAGQSLEFRQKNPKGFVFKGDPNLAYFLVDDVLTTGT
TLRQAIQTLRQVGAKVAFALVLAKA

Nucleotide


Download         Length: 558 bp        

>NTDB_id=88596 K6J74_RS01530 WP_221272169.1 303103..303660(-) (comFC) [Helicobacter sp. NHP19-012]
GTGCGCTGTTTTAGCTGTGGGGCGTTCAGTTTCAAGCTTCTTTGCAAGCGTTGCTACGCCGAGCTAGCCCCACTCCTAGA
AAACCATAGACTAGAAAATACCCCCATTTACAGCTTTTACGCCTACGACGAGATAGAGTTTTTACTAAAAAGCAAGTATA
GCCTCATAGGCAGCCGCCTTTTGCCCCTCTTGGCTCTAAGGGTGCGGGGTTTGCTAGAGCCCTTGCTACAAGAGCCCCTT
TATGCCCTGCCCATTGATGATCACATCAAAAGGGGTTACTCCCACACCGCCACCATCGCCCACGCGCTTTGCAAAAATAG
CCCCTGCAAACCTGTTTATAATAAATTATGCGCCACAAAAAACATCACCTACGCCGGGCAGAGTTTGGAATTTCGGCAAA
AAAACCCTAAGGGCTTTGTTTTTAAGGGCGATCCTAATTTGGCTTACTTTTTGGTGGACGATGTGCTCACCACAGGCACA
ACCCTACGCCAAGCAATCCAAACCCTACGCCAAGTGGGGGCAAAGGTGGCGTTCGCCCTTGTGCTCGCAAAGGCTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(150-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

48.947

100

0.503
  ctsW Campylobacter jejuni subsp. jejuni 81-176

38.021

100

0.395

Multiple sequence alignment