Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   AABJ87_RS20385 Genome accession   NZ_AP027642
Coordinates   4154882..4155892 (+) Length   336 a.a.
NCBI ID   WP_000568519.1    Uniprot ID   Q32HA1
Organism   Escherichia coli strain PSJ-32-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4149882..4160892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ87_RS20355 (VEE41_39020) nudB 4151606..4152058 (+) 453 WP_001300367.1 dihydroneopterin triphosphate diphosphatase -
  AABJ87_RS20360 (VEE41_39030) yebC 4152087..4152827 (+) 741 WP_000907234.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AABJ87_RS20365 (VEE41_39040) ruvC 4152862..4153383 (+) 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
  AABJ87_RS20370 (VEE41_39050) yebB 4153385..4153987 (-) 603 WP_001024904.1 YebB family permuted papain-like enzyme -
  AABJ87_RS20375 yobI 4154058..4154123 (+) 66 WP_072094247.1 stress response small protein YobI -
  AABJ87_RS20380 (VEE41_39060) ruvA 4154262..4154873 (+) 612 WP_000580327.1 Holliday junction branch migration protein RuvA -
  AABJ87_RS20385 (VEE41_39070) ruvB 4154882..4155892 (+) 1011 WP_000568519.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  AABJ87_RS20390 (VEE41_39080) znuB 4156039..4156824 (-) 786 WP_000571479.1 zinc ABC transporter permease subunit ZnuB -
  AABJ87_RS20395 (VEE41_39090) znuC 4156821..4157576 (-) 756 WP_000202996.1 zinc ABC transporter ATP-binding protein ZnuC -
  AABJ87_RS20400 (VEE41_39100) znuA 4157655..4158587 (+) 933 WP_001300644.1 zinc ABC transporter substrate-binding protein ZnuA -
  AABJ87_RS20405 (VEE41_39110) mepM 4158603..4159925 (+) 1323 WP_112910957.1 murein DD-endopeptidase MepM -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37173.77 Da        Isoelectric Point: 4.7818

>NTDB_id=88596 AABJ87_RS20385 WP_000568519.1 4154882..4155892(+) (ruvB) [Escherichia coli strain PSJ-32-1]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=88596 AABJ87_RS20385 WP_000568519.1 4154882..4155892(+) (ruvB) [Escherichia coli strain PSJ-32-1]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTAGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATTTGTTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATTTGGCTGCGATGCTCACTAACCTTGAACCGCA
TGACGTGCTGTTTATTGATGAGATCCACCGTTTATCGCCAGTTGTTGAAGAAGTGCTGTACCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGACCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGCGCTCGCGGTACGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGTTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGACCTGTAGGTCTGGATAACCTGGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

97.917

0.592
  ruvB Streptococcus pneumoniae TIGR4

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae R6

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae D39

58.934

94.94

0.56
  ruvB Synechocystis sp. PCC 6803

53.251

96.131

0.512
  ruvB Helicobacter pylori 26695

52.038

94.94

0.494

Multiple sequence alignment