Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   K6J72_RS03105 Genome accession   NZ_AP024814
Coordinates   582774..583586 (-) Length   270 a.a.
NCBI ID   WP_221280575.1    Uniprot ID   -
Organism   Helicobacter sp. NHP19-003     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 577774..588586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J72_RS03080 (NHP190003_06250) - 578253..579521 (+) 1269 WP_221280557.1 ArsS family sensor histidine kinase -
  K6J72_RS03085 (NHP190003_06260) - 579521..580720 (+) 1200 WP_221280559.1 hypothetical protein -
  K6J72_RS03090 (NHP190003_06270) hemB 580713..581681 (+) 969 WP_221280561.1 porphobilinogen synthase -
  K6J72_RS03095 (NHP190003_06280) - 581681..582403 (+) 723 WP_221280563.1 YebC/PmpR family DNA-binding transcriptional regulator -
  K6J72_RS03100 (NHP190003_06290) dprB 582385..582777 (-) 393 WP_221280565.1 RuvX/YqgF family protein Machinery gene
  K6J72_RS03105 (NHP190003_06300) dprA 582774..583586 (-) 813 WP_221280575.1 DNA-processing protein DprA Machinery gene
  K6J72_RS03110 (NHP190003_06310) minE 583586..583837 (-) 252 WP_221280586.1 cell division topological specificity factor MinE -
  K6J72_RS03115 (NHP190003_06320) minD 583834..584634 (-) 801 WP_221280588.1 septum site-determining protein MinD -
  K6J72_RS03120 (NHP190003_06330) ilvC 584643..585635 (-) 993 WP_221280590.1 ketol-acid reductoisomerase -
  K6J72_RS03125 (NHP190003_06340) - 585708..588323 (+) 2616 WP_221280592.1 phosphoenolpyruvate carboxylase -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 29534.62 Da        Isoelectric Point: 8.9817

>NTDB_id=88584 K6J72_RS03105 WP_221280575.1 582774..583586(-) (dprA) [Helicobacter sp. NHP19-003]
MLSPFAPKPLDFLPLSFKALKNPPKLLHYVGELKHLQAPLKVAIVGTRKPNTYTQQMTATLAKELVKIGAVVASGGALGV
DIIAQKNALPSTIMCAPCSLKRIYPPSNAKIIQEIAKVGLILSEYTEDFQPYRFTFLERNRLVIALSDLVIIPEAQENSG
SMASARLALELNKPLFVLPQRLFESPGTNALLAQNKAKAIYSTAAFVEGLARDFGLNVPQTLPDPTEVGFLEFCQKSPSF
EEAYALFGDLVLEQELLGVVKREKGRVVVQ

Nucleotide


Download         Length: 813 bp        

>NTDB_id=88584 K6J72_RS03105 WP_221280575.1 582774..583586(-) (dprA) [Helicobacter sp. NHP19-003]
ATGCTTAGCCCCTTTGCGCCCAAGCCCCTAGACTTTCTGCCCCTAAGTTTCAAAGCCCTAAAAAACCCCCCAAAACTCTT
GCACTATGTGGGGGAGCTAAAACACCTACAAGCCCCCCTGAAAGTGGCGATTGTCGGCACAAGAAAGCCCAACACCTACA
CCCAGCAAATGACCGCCACACTCGCCAAAGAGTTGGTTAAAATCGGGGCGGTGGTGGCAAGTGGGGGAGCACTTGGAGTA
GATATTATCGCTCAAAAAAACGCCCTGCCCTCTACAATTATGTGCGCCCCCTGCTCTTTAAAGCGCATTTACCCACCTAG
CAACGCCAAGATCATTCAAGAAATTGCGAAGGTGGGACTCATTTTAAGCGAATATACAGAAGACTTTCAGCCCTACCGCT
TTACCTTTTTAGAAAGAAACCGCCTCGTCATTGCCTTGAGCGATCTTGTCATCATCCCCGAAGCACAGGAAAACAGCGGG
TCTATGGCGAGCGCAAGGCTTGCGCTAGAGTTAAACAAGCCCTTATTTGTCCTGCCCCAAAGGCTCTTTGAGAGCCCGGG
CACAAACGCTTTACTCGCGCAAAATAAGGCCAAAGCCATTTACAGCACCGCCGCCTTTGTGGAGGGCTTGGCTAGAGATT
TTGGCTTAAATGTGCCCCAAACCCTTCCAGATCCCACAGAAGTGGGGTTTTTAGAGTTTTGCCAAAAGTCCCCGAGTTTT
GAAGAAGCTTACGCCCTCTTTGGGGATTTAGTGTTAGAACAAGAGCTCTTGGGTGTGGTGAAAAGAGAAAAGGGGCGGGT
GGTGGTGCAGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(14-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

57.993

99.63

0.578
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.235

94.444

0.456

Multiple sequence alignment