Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   K6J72_RS03100 Genome accession   NZ_AP024814
Coordinates   582385..582777 (-) Length   130 a.a.
NCBI ID   WP_221280565.1    Uniprot ID   -
Organism   Helicobacter sp. NHP19-003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 577385..587777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J72_RS03075 (NHP190003_06240) - 577569..578252 (+) 684 WP_221280554.1 response regulator transcription factor -
  K6J72_RS03080 (NHP190003_06250) - 578253..579521 (+) 1269 WP_221280557.1 ArsS family sensor histidine kinase -
  K6J72_RS03085 (NHP190003_06260) - 579521..580720 (+) 1200 WP_221280559.1 hypothetical protein -
  K6J72_RS03090 (NHP190003_06270) hemB 580713..581681 (+) 969 WP_221280561.1 porphobilinogen synthase -
  K6J72_RS03095 (NHP190003_06280) - 581681..582403 (+) 723 WP_221280563.1 YebC/PmpR family DNA-binding transcriptional regulator -
  K6J72_RS03100 (NHP190003_06290) dprB 582385..582777 (-) 393 WP_221280565.1 RuvX/YqgF family protein Machinery gene
  K6J72_RS03105 (NHP190003_06300) dprA 582774..583586 (-) 813 WP_221280575.1 DNA-processing protein DprA Machinery gene
  K6J72_RS03110 (NHP190003_06310) minE 583586..583837 (-) 252 WP_221280586.1 cell division topological specificity factor MinE -
  K6J72_RS03115 (NHP190003_06320) minD 583834..584634 (-) 801 WP_221280588.1 septum site-determining protein MinD -
  K6J72_RS03120 (NHP190003_06330) ilvC 584643..585635 (-) 993 WP_221280590.1 ketol-acid reductoisomerase -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14609.16 Da        Isoelectric Point: 8.5006

>NTDB_id=88583 K6J72_RS03100 WP_221280565.1 582385..582777(-) (dprB) [Helicobacter sp. NHP19-003]
MILACDIGLKRIGLAISVQGIILPLEPILRLNRKQASQELQALLDEKKPSCLVVGLPPENYTDTRKRILHFVGLLNFTPI
VFVNEGNTSCDALEYTHHLKAQKRQNARKDGTLDSLAACEILKRYQEMLV

Nucleotide


Download         Length: 393 bp        

>NTDB_id=88583 K6J72_RS03100 WP_221280565.1 582385..582777(-) (dprB) [Helicobacter sp. NHP19-003]
GTGATCCTCGCGTGCGACATCGGCTTAAAACGCATCGGTTTAGCCATAAGCGTGCAAGGCATTATTTTGCCCCTAGAGCC
CATTTTACGCCTCAATCGTAAACAAGCCAGCCAAGAGCTGCAGGCCCTGCTAGATGAGAAAAAGCCCTCTTGCCTGGTGG
TGGGCTTGCCCCCCGAAAACTACACAGACACCCGCAAGCGCATTTTGCACTTTGTGGGGCTGTTGAACTTTACACCCATT
GTGTTTGTCAATGAGGGCAACACAAGTTGCGATGCCCTAGAGTACACCCACCACCTCAAGGCGCAAAAACGCCAAAACGC
AAGAAAGGACGGCACGCTAGATAGCCTAGCTGCCTGTGAAATTTTAAAACGCTATCAAGAAATGTTGGTGTAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

56.349

96.923

0.546

Multiple sequence alignment