Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   OCUAc18_RS19895 Genome accession   NZ_AP024802
Coordinates   342971..343831 (-) Length   286 a.a.
NCBI ID   WP_002126490.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OCU Ac18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337971..348831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAc18_RS01635 (OCUAc18_03100) - 338862..340172 (+) 1311 WP_000753296.1 tetratricopeptide repeat protein -
  OCUAc18_RS01640 (OCUAc18_03110) - 340249..340575 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  OCUAc18_RS01645 (OCUAc18_03120) rlmB 340677..341426 (+) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OCUAc18_RS01650 (OCUAc18_03130) - 341462..342376 (+) 915 WP_002126491.1 DMT family transporter -
  OCUAc18_RS01655 (OCUAc18_03140) coaE 342373..342969 (-) 597 WP_002126478.1 dephospho-CoA kinase -
  OCUAc18_RS19895 (OCUAc18_03150) pilD 342971..343831 (-) 861 WP_002126490.1 A24 family peptidase Machinery gene
  OCUAc18_RS01665 (OCUAc18_03160) pilC 343831..345057 (-) 1227 WP_000279218.1 type II secretion system F family protein Machinery gene
  OCUAc18_RS01670 (OCUAc18_03170) pilB 345087..346799 (-) 1713 WP_001274979.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OCUAc18_RS01675 - 347062..347931 (+) 870 WP_016653396.1 IS982-like element ISAcsp2 family transposase -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32086.49 Da        Isoelectric Point: 7.1041

>NTDB_id=88579 OCUAc18_RS19895 WP_002126490.1 342971..343831(-) (pilD) [Acinetobacter baumannii strain OCU Ac18]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLATLGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=88579 OCUAc18_RS19895 WP_002126490.1 342971..343831(-) (pilD) [Acinetobacter baumannii strain OCU Ac18]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCCGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAACATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

98.951

100

0.99
  pilD Acinetobacter nosocomialis M2

98.601

100

0.986
  pilD Vibrio cholerae strain A1552

53.676

95.105

0.51
  pilD Vibrio campbellii strain DS40M4

52.399

94.755

0.497
  pilD Neisseria gonorrhoeae MS11

47.348

92.308

0.437

Multiple sequence alignment