Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   RNZ43_RS17590 Genome accession   NZ_CP135143
Coordinates   3511111..3511800 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain L33a     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3506111..3516800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNZ43_RS17555 - 3506309..3506791 (-) 483 WP_003151394.1 flagellar protein FlgN -
  RNZ43_RS17560 flgM 3506806..3507072 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  RNZ43_RS17565 - 3507142..3507561 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  RNZ43_RS17570 comFC 3507635..3508324 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  RNZ43_RS17575 - 3508330..3508614 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  RNZ43_RS17580 comFA 3508672..3510057 (-) 1386 WP_416405860.1 DEAD/DEAH box helicase Machinery gene
  RNZ43_RS17585 - 3510165..3511013 (-) 849 WP_003151387.1 DegV family protein -
  RNZ43_RS17590 degU 3511111..3511800 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RNZ43_RS17595 degS 3511877..3513040 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  RNZ43_RS17600 - 3513263..3513910 (+) 648 WP_007614107.1 YigZ family protein -
  RNZ43_RS17605 - 3513915..3515102 (+) 1188 WP_416405861.1 LCP family protein -
  RNZ43_RS17610 - 3515201..3516277 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=885620 RNZ43_RS17590 WP_003219701.1 3511111..3511800(-) (degU) [Bacillus velezensis strain L33a]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=885620 RNZ43_RS17590 WP_003219701.1 3511111..3511800(-) (degU) [Bacillus velezensis strain L33a]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGATGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1