Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   RNZ43_RS17580 Genome accession   NZ_CP135143
Coordinates   3508672..3510057 (-) Length   461 a.a.
NCBI ID   WP_416405860.1    Uniprot ID   -
Organism   Bacillus velezensis strain L33a     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3503672..3515057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNZ43_RS17545 flgL 3503847..3504764 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  RNZ43_RS17550 flgK 3504776..3506293 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  RNZ43_RS17555 - 3506309..3506791 (-) 483 WP_003151394.1 flagellar protein FlgN -
  RNZ43_RS17560 flgM 3506806..3507072 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  RNZ43_RS17565 - 3507142..3507561 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  RNZ43_RS17570 comFC 3507635..3508324 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  RNZ43_RS17575 - 3508330..3508614 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  RNZ43_RS17580 comFA 3508672..3510057 (-) 1386 WP_416405860.1 DEAD/DEAH box helicase Machinery gene
  RNZ43_RS17585 - 3510165..3511013 (-) 849 WP_003151387.1 DegV family protein -
  RNZ43_RS17590 degU 3511111..3511800 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RNZ43_RS17595 degS 3511877..3513040 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  RNZ43_RS17600 - 3513263..3513910 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52492.06 Da        Isoelectric Point: 10.3133

>NTDB_id=885619 RNZ43_RS17580 WP_416405860.1 3508672..3510057(-) (comFA) [Bacillus velezensis strain L33a]
MAEGASEFSEVRDFFYGRHLLRSEIPLSDHRIKRFIEKAYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGITVGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=885619 RNZ43_RS17580 WP_416405860.1 3508672..3510057(-) (comFA) [Bacillus velezensis strain L33a]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGCT
TTCAGATCATCGCATCAAGCGTTTTATAGAAAAAGCATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCTAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAGTCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.043

99.783

0.629