Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCUAc18_RS06750 Genome accession   NZ_AP024802
Coordinates   1396707..1397414 (-) Length   235 a.a.
NCBI ID   WP_000203217.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OCU Ac18     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1391707..1402414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAc18_RS06730 (OCUAc18_13060) - 1392783..1394102 (+) 1320 WP_000517792.1 adenylosuccinate synthase -
  OCUAc18_RS06735 (OCUAc18_13070) - 1394225..1394542 (+) 318 WP_000776214.1 hypothetical protein -
  OCUAc18_RS06740 (OCUAc18_13080) - 1394659..1395438 (+) 780 WP_001034598.1 M48 family metallopeptidase -
  OCUAc18_RS06745 (OCUAc18_13090) - 1395497..1396546 (-) 1050 WP_001159799.1 NADP(H)-dependent aldo-keto reductase -
  OCUAc18_RS06750 (OCUAc18_13100) crp 1396707..1397414 (-) 708 WP_000203217.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCUAc18_RS06755 - 1397655..1397774 (+) 120 Protein_1313 hypothetical protein -
  OCUAc18_RS06760 (OCUAc18_13110) - 1397853..1398275 (+) 423 WP_221255470.1 OsmC family protein -
  OCUAc18_RS06765 (OCUAc18_13120) - 1398367..1398792 (+) 426 WP_221255471.1 GNAT family N-acetyltransferase -
  OCUAc18_RS06770 (OCUAc18_13130) - 1398789..1399595 (-) 807 WP_032014902.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26567.18 Da        Isoelectric Point: 4.6625

>NTDB_id=88553 OCUAc18_RS06750 WP_000203217.1 1396707..1397414(-) (crp) [Acinetobacter baumannii strain OCU Ac18]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLEETPVTDEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=88553 OCUAc18_RS06750 WP_000203217.1 1396707..1397414(-) (crp) [Acinetobacter baumannii strain OCU Ac18]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGTCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCGCGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTTTGATACTTCATTAGAAGAAACCCCAGTCACTGACGAAGACTATGATGACGAAGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

99.574

100

0.996
  crp Vibrio cholerae strain A1552

47.343

88.085

0.417
  crp Haemophilus influenzae Rd KW20

48.705

82.128

0.4

Multiple sequence alignment