Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   QN329_RS10700 Genome accession   NZ_CP135103
Coordinates   2099691..2100725 (-) Length   344 a.a.
NCBI ID   WP_017647021.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain HU36/21     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2094691..2105725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN329_RS10660 - 2095269..2095421 (-) 153 Protein_2028 translation initiation factor IF-2 N-terminal domain-containing protein -
  QN329_RS10665 (QN329_10660) - 2095441..2095743 (-) 303 WP_001065560.1 YlxQ-related RNA-binding protein -
  QN329_RS10670 (QN329_10665) rnpM 2095736..2096032 (-) 297 WP_001140526.1 RNase P modulator RnpM -
  QN329_RS10675 (QN329_10670) nusA 2096054..2097205 (-) 1152 WP_000032295.1 transcription termination factor NusA -
  QN329_RS10680 (QN329_10675) rimP 2097241..2097717 (-) 477 WP_047210184.1 ribosome maturation factor RimP -
  QN329_RS10690 (QN329_10685) trmB 2098208..2098843 (-) 636 WP_017647022.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  QN329_RS10695 (QN329_10690) ccrZ 2098833..2099633 (-) 801 WP_000155919.1 cell cycle regulator CcrZ -
  QN329_RS10700 (QN329_10695) pptB 2099691..2100725 (-) 1035 WP_017647021.1 ABC transporter permease Regulator
  QN329_RS10705 (QN329_10700) pptA 2100727..2101452 (-) 726 WP_000912307.1 ABC transporter ATP-binding protein Regulator
  QN329_RS10710 (QN329_10705) - 2101524..2101710 (+) 187 Protein_2037 hypothetical protein -
  QN329_RS10715 (QN329_10710) - 2101762..2102265 (-) 504 WP_017647020.1 hypothetical protein -
  QN329_RS10720 (QN329_10715) - 2102601..2103020 (+) 420 WP_017647019.1 HIT family protein -
  QN329_RS10725 (QN329_10720) - 2103017..2103313 (+) 297 WP_017647018.1 hypothetical protein -
  QN329_RS10730 (QN329_10725) brpA 2103377..2104684 (-) 1308 WP_000708160.1 biofilm formation/cell division transcriptional regulator BrpA -
  QN329_RS10735 (QN329_10730) - 2104693..2105214 (-) 522 WP_017647017.1 GNAT family N-acetyltransferase -
  QN329_RS10740 (QN329_10735) tsaE 2105207..2105650 (-) 444 WP_032459127.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40232.62 Da        Isoelectric Point: 10.4988

>NTDB_id=885398 QN329_RS10700 WP_017647021.1 2099691..2100725(-) (pptB) [Streptococcus agalactiae strain HU36/21]
MKKLFNKRRSLFLTQNSKYLRYVFNDHFVLVLMFLSGFLLYQYSQLLKDFPKTHWPIIVIVSIIILMLLAMGGIASYLEP
ADKQFLLIKEEAIKEIINSAKKRTYIFWLVIQTLFLVLISPILIKLGLSVFMITLLIFGLGIIKWLVITYKVKVFYNNQN
LNWDAAINHEQERKQSILKFFSLFTNVKGISTSVKRRSFLDGILKLISKTPSRLWTNLFVRAFLRSSDYLGLTIRLVTLN
ILSVIFVNETYLALALAFVFNYLLLFQLLALGHHFDYQYMNQLYPVRLNAKASQLKGFLRVLSYAVTVIDIILIRELKPV
ILLIVLMLIVTEYYIPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=885398 QN329_RS10700 WP_017647021.1 2099691..2100725(-) (pptB) [Streptococcus agalactiae strain HU36/21]
ATGAAAAAGTTATTTAATAAACGTCGAAGTCTCTTTTTAACTCAAAATAGTAAATATTTGAGATACGTCTTTAATGATCA
TTTTGTATTAGTATTAATGTTTTTGTCAGGTTTTTTGTTATATCAGTATAGCCAGTTACTAAAAGACTTTCCAAAAACAC
ATTGGCCAATTATCGTGATTGTGTCAATCATTATCTTAATGTTACTAGCGATGGGGGGGATAGCCAGCTATTTAGAACCG
GCTGATAAACAATTTTTACTTATAAAAGAAGAAGCAATAAAGGAAATTATAAATTCTGCTAAAAAACGGACTTATATCTT
TTGGTTGGTTATTCAAACCTTATTTTTAGTATTAATATCACCAATTTTGATAAAGTTAGGCTTGTCAGTTTTTATGATTA
CATTGTTAATTTTTGGTCTAGGAATAATCAAATGGTTGGTGATAACTTACAAGGTAAAGGTCTTTTATAACAATCAAAAT
TTGAACTGGGATGCAGCTATAAATCATGAGCAGGAAAGAAAACAGAGTATATTAAAATTTTTCTCTTTGTTTACAAATGT
TAAGGGAATTTCGACAAGTGTAAAACGTCGTTCATTTTTAGATGGTATTCTAAAACTTATTTCTAAAACGCCATCGCGTT
TATGGACTAACTTATTTGTGAGGGCATTTCTAAGAAGCTCAGATTATCTTGGTTTAACAATAAGGTTGGTAACTTTAAAT
ATCTTATCAGTCATCTTTGTTAACGAAACCTACCTCGCCCTTGCTCTGGCATTTGTATTTAACTACTTATTATTGTTCCA
ATTATTAGCTTTAGGTCACCATTTTGATTATCAATACATGAATCAGCTCTATCCAGTTAGATTAAATGCTAAAGCAAGTC
AGCTAAAAGGTTTTCTCAGAGTATTATCATATGCTGTGACAGTAATTGATATCATACTTATAAGAGAATTGAAACCTGTT
ATATTATTGATAGTTTTGATGTTAATTGTGACGGAATATTACATCCCTTACAAAATAAAGAAGATGATTGACTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-159)

Bacterial ABC transporter protein EcsB (EcsB)

(147-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

48.547

100

0.485
  pptB Streptococcus salivarius strain HSISS4

48.256

100

0.483