Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEA   Type   Machinery gene
Locus tag   OCUAc17_RS15785 Genome accession   NZ_AP024798
Coordinates   3297659..3298063 (-) Length   134 a.a.
NCBI ID   WP_002117268.1    Uniprot ID   A0A009NDU9
Organism   Acinetobacter pittii strain OCU Ac17     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3292659..3303063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAc17_RS15755 (OCUAc17_30740) - 3292743..3293012 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  OCUAc17_RS15760 (OCUAc17_30750) rapZ 3293009..3293860 (-) 852 WP_002117179.1 RNase adapter RapZ -
  OCUAc17_RS15765 (OCUAc17_30760) panC 3293884..3294732 (-) 849 WP_002117191.1 pantoate--beta-alanine ligase -
  OCUAc17_RS15770 (OCUAc17_30770) panB 3294736..3295545 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  OCUAc17_RS15775 (OCUAc17_30780) folK 3295591..3296073 (-) 483 WP_002117282.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  OCUAc17_RS15780 (OCUAc17_30790) pcnB 3296070..3297533 (-) 1464 WP_002117192.1 polynucleotide adenylyltransferase PcnB -
  OCUAc17_RS15785 (OCUAc17_30800) comEA 3297659..3298063 (-) 405 WP_002117268.1 ComEA family DNA-binding protein Machinery gene
  OCUAc17_RS15790 (OCUAc17_30810) mazG 3298032..3298838 (-) 807 WP_002117253.1 nucleoside triphosphate pyrophosphohydrolase -
  OCUAc17_RS15795 (OCUAc17_30820) - 3298951..3299724 (+) 774 WP_002117159.1 SDR family oxidoreductase -
  OCUAc17_RS15800 (OCUAc17_30830) relA 3299771..3302077 (-) 2307 WP_002117181.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence


Protein


Download         Length: 134 a.a.        Molecular weight: 15424.68 Da        Isoelectric Point: 10.4871

>NTDB_id=88514 OCUAc17_RS15785 WP_002117268.1 3297659..3298063(-) (comEA) [Acinetobacter pittii strain OCU Ac17]
MQLSMNLWKNKHNIFIVLFWSLISSTFVQAQSFDQNFKEWKAKQQMYDQKLSMQQASHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=88514 OCUAc17_RS15785 WP_002117268.1 3297659..3298063(-) (comEA) [Acinetobacter pittii strain OCU Ac17]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAGCACAACATTTTCATTGTTTTATTTTGGAGCCTGATTTCTTCAACCTT
TGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGATGTATGATCAGAAGTTGAGCATGC
AACAAGCCTCTCATTCTAATAGTCCAAAAAGCTCAGTTATGACTGATTCGTCAGGGCAAATACACTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCGATTGTAGAATACCGTCAAAAGAATGGCGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGTATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains


Predicted by InterproScan.

(71-133)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A009NDU9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

70.073

100

0.716

  comEA Acinetobacter baumannii D1279779

69.343

100

0.709

  comEA Acinetobacter baylyi ADP1

41.935

92.537

0.388


Multiple sequence alignment