Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   RMP64_RS07005 Genome accession   NZ_CP135093
Coordinates   1410909..1411913 (-) Length   334 a.a.
NCBI ID   WP_004298830.1    Uniprot ID   -
Organism   Streptococcus suis strain 1652329     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1405909..1416913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP64_RS06990 (RMP64_06990) - 1405933..1407246 (-) 1314 WP_002935817.1 glycosyltransferase family 4 protein -
  RMP64_RS06995 (RMP64_06995) - 1407247..1408245 (-) 999 WP_024394421.1 glycosyltransferase family 4 protein -
  RMP64_RS07000 (RMP64_07000) - 1408556..1410475 (+) 1920 WP_029178651.1 Spy0128 family protein -
  RMP64_RS07005 (RMP64_07005) ccpA 1410909..1411913 (-) 1005 WP_004298830.1 catabolite control protein A Regulator
  RMP64_RS07010 (RMP64_07010) - 1412123..1413208 (+) 1086 WP_024394423.1 Xaa-Pro peptidase family protein -
  RMP64_RS07015 (RMP64_07015) tgt 1413247..1414389 (-) 1143 WP_002935810.1 tRNA guanosine(34) transglycosylase Tgt -
  RMP64_RS07020 (RMP64_07020) - 1414993..1415835 (+) 843 WP_024394424.1 DUF975 family protein -
  RMP64_RS07025 (RMP64_07025) - 1416397..1416834 (-) 438 WP_024394425.1 CoA-binding protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36786.97 Da        Isoelectric Point: 5.5173

>NTDB_id=885045 RMP64_RS07005 WP_004298830.1 1410909..1411913(-) (ccpA) [Streptococcus suis strain 1652329]
MLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYF
ATLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLP
SVNIDYAAASVDAVNLLAKNNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEGLVFESKYKYEEGYALAERILNA
GATAAYVAEDEIAAGLLNGVSDMGIKVPEDFEIITSDDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENRE
VVLNHGIKVRKSTK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=885045 RMP64_RS07005 WP_004298830.1 1410909..1411913(-) (ccpA) [Streptococcus suis strain 1652329]
ATGTTAAACACTGACGATACGGTAACGATTTATGACGTTGCCCGCGAAGCAGGTGTATCCATGGCGACAGTATCGCGCGT
GGTAAATGGGAATAAAAACGTAAAGGAAAATACTCGTAAAAAAGTATTAGAAGTCATCGACCGTTTGGATTATCGTCCGA
ATGCTGTTGCACGTGGCTTGGCCAGCAAGAAGACTACCACTGTGGGGGTTGTGATTCCAAATATTGCTAATGCTTATTTT
GCAACCTTGGCCAAAGGTATCGATGATATTGCCGATATGTACAAATACAATATCGTCTTAGCAAACAGTGATGAAAATGA
TGAGAAAGAAATCAATGTGGTGAATACCCTATTCTCAAAACAGGTGGACGGAATCATTTTCATGGGCTATCATTTGACAG
ACAAGATTCGTGCGGAGTTTTCACGCTCACGTACACCGATTGTTTTAGCTGGTACCGTGGACTTGGAGCACCAATTACCT
AGCGTCAATATTGACTACGCTGCCGCTAGTGTTGATGCAGTCAATCTATTAGCTAAGAACAACAAGAAAATTGCCTTTGT
ATCAGGGCCGCTTGTAGATGACATCAACGGTAAAGTTCGTTTTGCAGGCTACAAACAAGGCTTGAAGGACAACGGAATCG
AGTTTAACGAAGGATTGGTTTTTGAATCCAAGTATAAATACGAGGAAGGCTACGCTCTAGCAGAACGTATTTTGAATGCC
GGAGCAACTGCAGCTTATGTTGCAGAAGATGAGATTGCTGCAGGTCTATTGAACGGTGTCAGTGATATGGGCATCAAGGT
TCCGGAAGATTTTGAAATCATCACAAGTGATGATTCCCTAGTGACTAAGTTTACCCGTCCAAACCTGACCTCTATCAATC
AGCCACTATATGATATTGGTGCAATTGCTATGCGCATGCTTACCAAAATCATGCACAAGGAAGAGTTGGAAAACCGTGAG
GTAGTTCTTAACCACGGAATCAAAGTACGGAAATCAACTAAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(9-54)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

79.88

99.701

0.796
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.279

99.701

0.79
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.912

99.102

0.584