Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RMQ61_RS09450 Genome accession   NZ_CP135090
Coordinates   1936075..1936569 (-) Length   164 a.a.
NCBI ID   WP_002942409.1    Uniprot ID   A0A075SLH4
Organism   Streptococcus suis strain ID48908     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1931075..1941569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS09435 (RMQ61_09440) - 1933848..1934792 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  RMQ61_RS09440 (RMQ61_09445) - 1934808..1935464 (+) 657 WP_002939249.1 DUF1129 domain-containing protein -
  RMQ61_RS09445 (RMQ61_09450) rpsR 1935803..1936042 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  RMQ61_RS09450 (RMQ61_09455) ssbA 1936075..1936569 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  RMQ61_RS09455 (RMQ61_09460) rpsF 1936581..1936871 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  RMQ61_RS09460 (RMQ61_09465) - 1937043..1938032 (-) 990 WP_015647335.1 lipoate--protein ligase -
  RMQ61_RS09465 (RMQ61_09470) - 1938116..1939555 (-) 1440 WP_002937719.1 6-phospho-beta-glucosidase -
  RMQ61_RS09470 (RMQ61_09475) - 1939552..1940172 (-) 621 WP_313920596.1 histidine phosphatase family protein -
  RMQ61_RS09475 (RMQ61_09480) - 1940184..1940783 (-) 600 WP_313920598.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18102.87 Da        Isoelectric Point: 4.7294

>NTDB_id=884998 RMQ61_RS09450 WP_002942409.1 1936075..1936569(-) (ssbA) [Streptococcus suis strain ID48908]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=884998 RMQ61_RS09450 WP_002942409.1 1936075..1936569(-) (ssbA) [Streptococcus suis strain ID48908]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACACGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTACAACTCACCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SLH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366