Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   RMQ61_RS08130 Genome accession   NZ_CP135090
Coordinates   1662517..1663461 (-) Length   314 a.a.
NCBI ID   WP_398584300.1    Uniprot ID   -
Organism   Streptococcus suis strain ID48908     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1657517..1668461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS08110 (RMQ61_08115) - 1658509..1658868 (-) 360 Protein_1562 MazG-like protein -
  RMQ61_RS08115 (RMQ61_08120) - 1659127..1659501 (-) 375 WP_313926259.1 hypothetical protein -
  RMQ61_RS08120 (RMQ61_08125) - 1659516..1660829 (-) 1314 WP_024407007.1 glycosyltransferase family 4 protein -
  RMQ61_RS08125 (RMQ61_08130) - 1660830..1661828 (-) 999 WP_313926260.1 glycosyltransferase -
  RMQ61_RS11785 - 1661994..1662083 (+) 90 Protein_1566 LPXTG cell wall anchor domain-containing protein -
  RMQ61_RS08130 (RMQ61_08135) ccpA 1662517..1663461 (-) 945 WP_398584300.1 catabolite control protein A Regulator
  RMQ61_RS08135 (RMQ61_08140) - 1663731..1664816 (+) 1086 WP_313919754.1 Xaa-Pro peptidase family protein -
  RMQ61_RS08140 (RMQ61_08145) tgt 1665148..1666290 (-) 1143 WP_044763490.1 tRNA guanosine(34) transglycosylase Tgt -
  RMQ61_RS08145 (RMQ61_08150) - 1666824..1667666 (+) 843 WP_253213405.1 DUF975 family protein -
  RMQ61_RS08150 (RMQ61_08155) - 1667959..1668399 (-) 441 WP_105119131.1 CoA-binding protein -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 34634.60 Da        Isoelectric Point: 6.5148

>NTDB_id=884993 RMQ61_RS08130 WP_398584300.1 1662517..1663461(-) (ccpA) [Streptococcus suis strain ID48908]
MATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFATLAKGIDDIADMYKYNIVL
ANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLPSVNIDYAAASVDAVNLLAKN
NKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEGLVFESKYKYEEGYALAERILNAGATAAYVAEDEIAAGLLNGV
SDMGIKVPEDFEIITSDDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENREVVLNHGIKVRKSTK

Nucleotide


Download         Length: 945 bp        

>NTDB_id=884993 RMQ61_RS08130 WP_398584300.1 1662517..1663461(-) (ccpA) [Streptococcus suis strain ID48908]
ATGGCGACAGTATCGCGCGTGGTAAATGGGAATAAAAACGTAAAGGAAAATACTCGTAAAAAAGTATTAGAAGTCATCGA
CCGTTTGGATTATCGTCCAAATGCTGTTGCACGTGGATTGGCCAGCAAGAAGACTACCACTGTGGGGGTTGTGATTCCAA
ATATTGCCAATGCTTATTTTGCAACCTTGGCCAAAGGTATCGATGATATTGCCGATATGTACAAATACAATATCGTCCTA
GCAAACAGTGATGAAAATGATGAGAAAGAAATCAATGTGGTAAATACCCTATTCTCAAAACAGGTGGACGGAATCATTTT
CATGGGCTATCATTTGACAGACAAGATTCGTGCGGAGTTTTCACGCTCACGTACACCGATTGTTTTAGCTGGTACCGTGG
ACTTGGAGCACCAATTACCTAGCGTCAATATTGACTACGCTGCCGCTAGTGTTGATGCAGTCAATCTATTAGCTAAGAAC
AACAAGAAAATTGCCTTTGTATCAGGGCCGCTTGTAGATGACATCAACGGTAAAGTTCGTTTTGCAGGCTACAAACAAGG
CTTGAAGGACAACGGAATCGAGTTTAACGAAGGATTGGTTTTTGAATCCAAGTATAAATACGAGGAAGGCTACGCTCTAG
CCGAACGTATTTTGAATGCCGGAGCAACTGCAGCTTATGTTGCAGAAGATGAGATTGCTGCAGGTCTATTGAACGGTGTT
AGTGATATGGGCATCAAGGTTCCAGAAGATTTTGAAATCATCACAAGTGATGATTCCCTAGTGACTAAGTTTACCCGTCC
AAACCTGACCTCTATCAATCAGCCGCTATATGATATTGGTGCAATTGCTATGCGCATGCTCACCAAAATCATGCATAAGG
AAGAGTTGGAAAACCGTGAGGTAGTTCTTAACCACGGAATCAAAGTACGGAAATCAACTAAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(1-34)

Periplasmic binding protein-like domain (Peripla_BP_3)

(156-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

79.299

100

0.793
  ccpA Streptococcus gordonii str. Challis substr. CH1

78.344

100

0.783
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.095

100

0.583