Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   RMQ61_RS08070 Genome accession   NZ_CP135090
Coordinates   1649783..1651132 (-) Length   449 a.a.
NCBI ID   WP_044761697.1    Uniprot ID   -
Organism   Streptococcus suis strain ID48908     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1644783..1656132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS08045 (RMQ61_08050) - 1646240..1646416 (-) 177 WP_398584291.1 hypothetical protein -
  RMQ61_RS08050 (RMQ61_08055) - 1646650..1647291 (-) 642 WP_029749608.1 hypothetical protein -
  RMQ61_RS08055 (RMQ61_08060) - 1647368..1647667 (-) 300 WP_313919733.1 hypothetical protein -
  RMQ61_RS08060 (RMQ61_08065) - 1647973..1648614 (-) 642 WP_313919736.1 ATP-binding cassette domain-containing protein -
  RMQ61_RS08065 (RMQ61_08070) vicX 1648973..1649776 (-) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator
  RMQ61_RS08070 (RMQ61_08075) micB 1649783..1651132 (-) 1350 WP_044761697.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RMQ61_RS08075 (RMQ61_08080) micA 1651125..1651829 (-) 705 WP_004298854.1 response regulator YycF Regulator
  RMQ61_RS08080 (RMQ61_08085) - 1652023..1652784 (+) 762 WP_313919738.1 amino acid ABC transporter ATP-binding protein -
  RMQ61_RS08085 (RMQ61_08090) - 1652795..1653634 (+) 840 WP_313919740.1 transporter substrate-binding domain-containing protein -
  RMQ61_RS08090 (RMQ61_08095) - 1653649..1654347 (+) 699 WP_313919742.1 amino acid ABC transporter permease -
  RMQ61_RS08095 (RMQ61_08100) - 1654362..1655021 (+) 660 WP_313919744.1 amino acid ABC transporter permease -
  RMQ61_RS11780 - 1655269..1655568 (+) 300 WP_398584292.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51035.09 Da        Isoelectric Point: 4.5202

>NTDB_id=884991 RMQ61_RS08070 WP_044761697.1 1649783..1651132(-) (micB) [Streptococcus suis strain ID48908]
MINQLRYLMTTAEFWFVVILIGFLIALTVLLIENYRDNKQIKQLNQKVNALIEGNYADVLDMRGSPEITDMANSLNDLSE
VIRLTHDNLEQEKTRLTSILSYMSDGVIATDRIGRIIMINDMAQKQLGLSNPKQEQYHLLEVLDLSDRYTLRDLLAQTPE
IVIDHTNENEEFLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALT
ESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFILNRFDQMKNADSDKVYTIVRDYQISPLW
VEIDTDKMTQVLDNILNNAIKYSPDGGTITFSMKTTDSQLIVSVSDEGLGIPKADLPRIFDRFYRVDKARSRAQGGTGLG
LAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLPYSKDIALDEWDDSDEEE

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=884991 RMQ61_RS08070 WP_044761697.1 1649783..1651132(-) (micB) [Streptococcus suis strain ID48908]
ATGATTAATCAATTACGTTATTTAATGACCACGGCAGAATTTTGGTTTGTTGTCATTTTGATTGGCTTTCTAATTGCTCT
GACGGTCCTTTTGATTGAAAACTATCGGGATAATAAGCAAATTAAACAACTCAATCAAAAAGTCAATGCCTTAATTGAGG
GGAATTATGCAGATGTGTTAGACATGAGGGGAAGTCCTGAAATCACAGATATGGCTAATTCTCTCAATGATTTGTCCGAG
GTCATCCGCTTAACTCATGATAATTTAGAACAAGAAAAGACACGTCTGACGTCCATCCTGTCCTATATGAGTGACGGTGT
TATTGCTACAGACCGTATCGGACGGATCATCATGATTAACGATATGGCCCAGAAACAGTTGGGGTTATCTAACCCAAAGC
AGGAGCAGTATCACCTGCTCGAGGTTTTAGATTTATCAGACCGTTATACATTGAGAGATTTGTTGGCTCAGACACCTGAG
ATTGTGATTGATCACACCAATGAAAACGAAGAATTTTTGACTTTACGCGCTAATTTTGCAACGATTCGTAGTGAGAGTGG
TCTGATTTCTGGCTTGGTTGTCGTCTTGCATGATATGACCGAGCAGGCCAAGGAAGAACGGGAACGTAGGCTGTTTGTGT
CAAATGTGAGTCATGAATTGCGTACGCCATTGACTTCCGTTAAATCCTATCTAGAGGCTCTGGATGAGGGAGCGCTGACG
GAGTCTGTTGCACCGAGTTTTGTTAAGGTATCCTTAGATGAGACCAACCGCATGATGCGGATGATTACAGACCTCCTAAG
CCTATCGCGCATTGATAATCAAGTTGGTCAGATAGATGTTGAACTGATAAACTTTACTGCTTTTGTGACCTTTATTCTTA
ACCGTTTTGACCAAATGAAAAATGCTGATTCTGATAAGGTCTATACGATTGTTCGTGACTATCAAATTAGTCCTCTTTGG
GTTGAGATTGATACAGATAAGATGACTCAGGTTTTGGATAATATCTTAAATAATGCCATTAAATATTCGCCAGACGGCGG
GACAATTACCTTCAGCATGAAGACCACAGATAGCCAGTTGATTGTATCCGTCTCAGACGAAGGTCTGGGGATTCCGAAAG
CAGATTTACCTAGAATTTTTGATCGATTCTATCGCGTGGACAAGGCACGATCTCGTGCCCAAGGCGGTACAGGTCTTGGT
TTAGCTATTGCAAAAGAAATCGTGAAACAACATAAGGGCTTTATCTGGGCTAAAAGCGAATATGGTCATGGCTCAACGTT
TACAATTGTCTTGCCGTACAGCAAGGACATCGCACTTGATGAGTGGGATGATTCAGATGAGGAAGAATAG

Domains

Predicted by InterproScan.

PAS fold (PAS)

(96-199)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

69.954

97.105

0.679
  vicK Streptococcus mutans UA159

70.72

89.755

0.635