Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   OCUAc17_RS01720 Genome accession   NZ_AP024798
Coordinates   363491..364300 (+) Length   269 a.a.
NCBI ID   WP_005067126.1    Uniprot ID   A0A009NM66
Organism   Acinetobacter pittii strain OCU Ac17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 358491..369300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAc17_RS01685 - 359049..359171 (-) 123 Protein_324 hypothetical protein -
  OCUAc17_RS01690 (OCUAc17_03210) rpoZ 359243..359521 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  OCUAc17_RS01695 (OCUAc17_03220) gmk 359594..360223 (-) 630 WP_005804544.1 guanylate kinase -
  OCUAc17_RS01700 (OCUAc17_03230) ispH 360346..361296 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OCUAc17_RS01705 (OCUAc17_03240) fimU 361466..361939 (+) 474 WP_005804545.1 GspH/FimT family pseudopilin Machinery gene
  OCUAc17_RS01710 (OCUAc17_03250) pilV 361933..362493 (+) 561 WP_078210318.1 type IV pilus modification protein PilV Machinery gene
  OCUAc17_RS01715 (OCUAc17_03260) pilW 362493..363494 (+) 1002 WP_005804547.1 PilW family protein Machinery gene
  OCUAc17_RS01720 (OCUAc17_03270) pilX 363491..364300 (+) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OCUAc17_RS01725 (OCUAc17_03280) pilY1 364312..368166 (+) 3855 WP_221255055.1 PilC/PilY family type IV pilus protein Machinery gene
  OCUAc17_RS01730 (OCUAc17_03290) pilY2 368177..368659 (+) 483 WP_005804550.1 type IV pilin protein Machinery gene
  OCUAc17_RS01735 (OCUAc17_03300) pilE 368656..369081 (+) 426 WP_221255056.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28531.35 Da        Isoelectric Point: 7.7238

>NTDB_id=88494 OCUAc17_RS01720 WP_005067126.1 363491..364300(+) (pilX) [Acinetobacter pittii strain OCU Ac17]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=88494 OCUAc17_RS01720 WP_005067126.1 363491..364300(+) (pilX) [Acinetobacter pittii strain OCU Ac17]
ATGACCCATTTAATTCATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACTCCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAATCCTGGAGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGCGCCAATAATGCGGTTGTCGAAGATGGCGGCGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCGATATTCCAGGCTCAAATTTACCACGAGGAACAAATACCTCGGAAGGTACGCAACTTCCTAAAAGCATGTT
GTCTACGCAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGTTTAAGCACGAGTTCGGCAAAAATTAGCGATAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009NM66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.706

100

0.907

Multiple sequence alignment