Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RMP65_RS07055 Genome accession   NZ_CP135089
Coordinates   1433476..1434279 (-) Length   267 a.a.
NCBI ID   WP_024399908.1    Uniprot ID   -
Organism   Streptococcus suis strain ID34567     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1428476..1439279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP65_RS07040 (RMP65_07040) recR 1429067..1429663 (-) 597 WP_024408566.1 recombination mediator RecR -
  RMP65_RS07045 (RMP65_07045) pbp2b 1429672..1431741 (-) 2070 WP_313681058.1 penicillin-binding protein PBP2B -
  RMP65_RS07050 (RMP65_07050) vga(F) 1431833..1433218 (-) 1386 WP_014637680.1 ABC-F type ribosomal protection protein Vga(F) -
  RMP65_RS07055 (RMP65_07055) vicX 1433476..1434279 (-) 804 WP_024399908.1 MBL fold metallo-hydrolase Regulator
  RMP65_RS07060 (RMP65_07060) micB 1434286..1435635 (-) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RMP65_RS07065 (RMP65_07065) micA 1435628..1436332 (-) 705 WP_004298854.1 response regulator YycF Regulator
  RMP65_RS07070 (RMP65_07070) - 1436526..1437287 (+) 762 WP_024407012.1 amino acid ABC transporter ATP-binding protein -
  RMP65_RS07075 (RMP65_07075) - 1437298..1438137 (+) 840 WP_313681060.1 transporter substrate-binding domain-containing protein -
  RMP65_RS07080 (RMP65_07080) - 1438152..1438850 (+) 699 WP_013730248.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29689.78 Da        Isoelectric Point: 5.7755

>NTDB_id=884938 RMP65_RS07055 WP_024399908.1 1433476..1434279(-) (vicX) [Streptococcus suis strain ID34567]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
TQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=884938 RMP65_RS07055 WP_024399908.1 1433476..1434279(-) (vicX) [Streptococcus suis strain ID34567]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACTTGGAAACAGATAAAAA
GAAAATCTTAGTGGATGCGGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGACCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAT
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCATTTGGTGTCAGTCATGATGCGGCCTGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCAGGTTCATATTCATGGAATTTGAA
GCAACGGATTTTGTCAGATAAGGGCCACCTTTGTAACGAAGACGGTGCTGACGCCATGATTCGCTCGTTGGGAAATCGGA
CAAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAATTG
ACTCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772