Detailed information NTG0884747

Bioinformatically predicted

Overview

• Name: ccpA
• Type: Regulator
• Locus tag: RMQ62_RS08975
• Genome accession: NZ_CP135065
• Coordinates: 1853141..1854145 (+)
• Length: 334 a.a.
• NCBI ID: WP_004298830.1
• Uniprot ID: -
• Organism: Streptococcus suis strain ID24665
• Function: regulate comCDE transcription and transformation (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1848002..1862865	1853141..1854145	within	0

Gene organization within MGE regions

Location: 1848002..1862865

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RMQ62_RS08970 (RMQ62_08970)	-	1851846..1852931 (-)	1086	WP_024376342.1	Xaa-Pro peptidase family protein	-
RMQ62_RS08975 (RMQ62_08975)	ccpA	1853141..1854145 (+)	1005	WP_004298830.1	catabolite control protein A	Regulator
RMQ62_RS08980 (RMQ62_08980)	-	1855213..1855863 (+)	651	WP_024384330.1	response regulator transcription factor	-
RMQ62_RS08985 (RMQ62_08985)	-	1855864..1857225 (+)	1362	WP_024384329.1	HAMP domain-containing sensor histidine kinase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36786.97 Da
• Isoelectric Point: 5.5173

>NTDB_id=884747 RMQ62_RS08975 WP_004298830.1 1853141..1854145(+) (ccpA) [Streptococcus suis strain ID24665]
MLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYF
ATLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLP
SVNIDYAAASVDAVNLLAKNNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEGLVFESKYKYEEGYALAERILNA
GATAAYVAEDEIAAGLLNGVSDMGIKVPEDFEIITSDDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENRE
VVLNHGIKVRKSTK

Nucleotide

• Length: 1005 bp

>NTDB_id=884747 RMQ62_RS08975 WP_004298830.1 1853141..1854145(+) (ccpA) [Streptococcus suis strain ID24665]
ATGTTAAACACTGACGATACGGTAACGATTTATGACGTTGCCCGCGAAGCAGGTGTATCCATGGCGACAGTATCGCGCGT
GGTAAATGGGAATAAAAACGTAAAGGAAAATACTCGTAAAAAAGTATTAGAAGTCATCGACCGTTTGGATTATCGTCCGA
ATGCTGTTGCACGTGGCTTGGCCAGCAAGAAGACTACCACTGTGGGGGTTGTGATTCCAAACATTGCTAATGCTTATTTT
GCAACCTTGGCCAAAGGTATCGATGATATTGCCGATATGTACAAATACAATATCGTCCTAGCAAACAGTGATGAAAATGA
TGAGAAAGAAATCAATGTAGTAAATACCCTATTCTCAAAACAGGTGGACGGAATCATTTTCATGGGCTATCATTTGACAG
ACAAGATTCGTGCGGAGTTTTCACGCTCACGTACACCGATTGTTTTAGCTGGTACCGTGGATTTGGAGCACCAATTACCT
AGTGTCAATATTGACTATGCTGCCGCTAGTGTTGATGCAGTCAATCTGTTAGCTAAGAACAACAAGAAAATTGCCTTTGT
ATCAGGGCCGCTTGTAGATGACATCAATGGTAAAGTTCGTTTTGCAGGCTACAAACAAGGCTTGAAGGACAACGGAATCG
AGTTTAACGAAGGATTGGTTTTTGAATCCAAGTATAAATACGAGGAAGGCTACGCTCTAGCAGAACGTATTTTGAATGCC
GGAGCAACTGCAGCTTATGTTGCAGAAGATGAGATTGCTGCTGGTCTATTGAATGGTGTCAGTGATATGGGCATCAAGGT
TCCAGAAGACTTTGAAATCATTACAAGTGATGATTCCCTAGTGACCAAGTTTACCCGTCCAAACCTGACCTCTATCAATC
AGCCGCTATATGATATTGGTGCAATTGCTATGCGCATGCTTACCAAAATCATGCATAAGGAAGAGTTGGAAAACCGTGAG
GTAGTTCTTAACCACGGAATCAAAGTACGGAAATCAACTAAGTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (9-54)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-333)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccpA	Streptococcus pneumoniae D39	79.88	99.701	0.796
ccpA	Streptococcus gordonii str. Challis substr. CH1	79.279	99.701	0.79
ccpA	Lactococcus lactis subsp. lactis strain DGCC12653	58.912	99.102	0.584