Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   RMQ63_RS02510 Genome accession   NZ_CP135063
Coordinates   527561..528565 (-) Length   334 a.a.
NCBI ID   WP_004298830.1    Uniprot ID   -
Organism   Streptococcus suis strain ID32563     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 518805..533704 527561..528565 within 0


Gene organization within MGE regions


Location: 518805..533704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ63_RS02500 (RMQ63_02500) - 524481..525842 (-) 1362 WP_024384329.1 HAMP domain-containing sensor histidine kinase -
  RMQ63_RS02505 (RMQ63_02505) - 525843..526493 (-) 651 WP_024384330.1 response regulator transcription factor -
  RMQ63_RS02510 (RMQ63_02510) ccpA 527561..528565 (-) 1005 WP_004298830.1 catabolite control protein A Regulator
  RMQ63_RS02515 (RMQ63_02515) - 528775..529860 (+) 1086 WP_024376342.1 Xaa-Pro peptidase family protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36786.97 Da        Isoelectric Point: 5.5173

>NTDB_id=884663 RMQ63_RS02510 WP_004298830.1 527561..528565(-) (ccpA) [Streptococcus suis strain ID32563]
MLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYF
ATLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLP
SVNIDYAAASVDAVNLLAKNNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEGLVFESKYKYEEGYALAERILNA
GATAAYVAEDEIAAGLLNGVSDMGIKVPEDFEIITSDDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENRE
VVLNHGIKVRKSTK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=884663 RMQ63_RS02510 WP_004298830.1 527561..528565(-) (ccpA) [Streptococcus suis strain ID32563]
ATGTTAAACACTGACGATACGGTAACGATTTATGACGTTGCCCGCGAAGCAGGTGTATCCATGGCGACAGTATCGCGCGT
GGTAAATGGGAATAAAAACGTAAAGGAAAATACTCGTAAAAAAGTATTAGAAGTCATCGACCGTTTGGATTATCGTCCGA
ATGCTGTTGCACGTGGCTTGGCCAGCAAGAAGACTACCACTGTGGGGGTTGTGATTCCAAACATTGCTAATGCTTATTTT
GCAACCTTGGCCAAAGGTATCGATGATATTGCCGATATGTACAAATACAATATCGTCCTAGCAAACAGTGATGAAAATGA
TGAGAAAGAAATCAATGTAGTAAATACCCTATTCTCAAAACAGGTGGACGGAATCATTTTCATGGGCTATCATTTGACAG
ACAAGATTCGTGCGGAGTTTTCACGCTCACGTACACCGATTGTTTTAGCTGGTACCGTGGATTTGGAGCACCAATTACCT
AGTGTCAATATTGACTATGCTGCCGCTAGTGTTGATGCAGTCAATCTGTTAGCTAAGAACAACAAGAAAATTGCCTTTGT
ATCAGGGCCGCTTGTAGATGACATCAATGGTAAAGTTCGTTTTGCAGGCTACAAACAAGGCTTGAAGGACAACGGAATCG
AGTTTAACGAAGGATTGGTTTTTGAATCCAAGTATAAATACGAGGAAGGCTACGCTCTAGCAGAACGTATTTTGAATGCC
GGAGCAACTGCAGCTTATGTTGCAGAAGATGAGATTGCTGCTGGTCTATTGAATGGTGTCAGTGATATGGGCATCAAGGT
TCCAGAAGACTTTGAAATCATTACAAGTGATGATTCCCTAGTGACCAAGTTTACCCGTCCAAACCTGACCTCTATCAATC
AGCCGCTATATGATATTGGTGCAATTGCTATGCGCATGCTTACCAAAATCATGCATAAGGAAGAGTTGGAAAACCGTGAG
GTAGTTCTTAACCACGGAATCAAAGTACGGAAATCAACTAAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(9-54)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

79.88

99.701

0.796
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.279

99.701

0.79
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.912

99.102

0.584