Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ViNHUV68_RS02060 Genome accession   NZ_CP134975
Coordinates   409755..410981 (-) Length   408 a.a.
NCBI ID   WP_391090239.1    Uniprot ID   -
Organism   Vibrio sp. NH-UV-68     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 404755..415981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ViNHUV68_RS02020 (ViNHUV68_04080) rpsP 405097..405345 (+) 249 WP_004742593.1 30S ribosomal protein S16 -
  ViNHUV68_RS02025 (ViNHUV68_04090) rimM 405371..405919 (+) 549 WP_038173822.1 ribosome maturation factor RimM -
  ViNHUV68_RS02030 (ViNHUV68_04100) trmD 405945..406694 (+) 750 WP_038173823.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ViNHUV68_RS02035 (ViNHUV68_04110) rplS 406743..407096 (+) 354 WP_038173824.1 50S ribosomal protein L19 -
  ViNHUV68_RS02040 (ViNHUV68_04120) yacG 407203..407397 (-) 195 WP_391089076.1 DNA gyrase inhibitor YacG -
  ViNHUV68_RS02045 (ViNHUV68_04130) zapD 407463..408203 (-) 741 WP_391089078.1 cell division protein ZapD -
  ViNHUV68_RS02050 (ViNHUV68_04140) coaE 408238..408846 (-) 609 WP_038173829.1 dephospho-CoA kinase -
  ViNHUV68_RS02055 (ViNHUV68_04150) pilD 408848..409717 (-) 870 WP_391089080.1 prepilin peptidase Machinery gene
  ViNHUV68_RS02060 (ViNHUV68_04160) pilC 409755..410981 (-) 1227 WP_391090239.1 type II secretion system F family protein Machinery gene
  ViNHUV68_RS02065 (ViNHUV68_04170) pilB 410991..412682 (-) 1692 WP_391089082.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ViNHUV68_RS02070 (ViNHUV68_04180) - 412682..413086 (-) 405 WP_391089084.1 pilin -
  ViNHUV68_RS02075 (ViNHUV68_04190) nadC 413299..414186 (-) 888 WP_038173834.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ViNHUV68_RS02080 (ViNHUV68_04200) ampD 414318..414869 (+) 552 WP_391089086.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ViNHUV68_RS02085 (ViNHUV68_04210) fldB 414866..415387 (-) 522 WP_391089088.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45558.80 Da        Isoelectric Point: 10.2694

>NTDB_id=884376 ViNHUV68_RS02060 WP_391090239.1 409755..410981(-) (pilC) [Vibrio sp. NH-UV-68]
MMLPSRTPLSHYHWKGINTAGKRCCGKMLASHESDIRHHLKNNSITLLSLKRRNSSLLSRWQHKARPQDITVMTRQLATM
LASGVTLVHALKLISHNQRKAEMRLLITRMSAIVESGTPISQAMGQTSVLFDDFYRDLIKVGEQSGRLSDVIERLATYRE
KSQRLKAKLKTALIYPTLVLATAIIVSYLMLAFVVPQFEAMFAGLGAQLPWFTQQVLKVSRFIQNYTGYLLLSIGTVIWG
CRKLVSVSPIMQLRLSSWVLKLPVVGSAIEKAALSKFCRSLSTSVSAGVAIHHGLASAIKTTPNHYYQEAIQHVFEQTLA
GMPIYIALRERGAFPALMVQMIMVGEESGQLDDMLRKVADIYQLEIDNQIENLEKSLEPLMVLLLGTIVGSLVVALYLPI
FNLMNVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=884376 ViNHUV68_RS02060 WP_391090239.1 409755..410981(-) (pilC) [Vibrio sp. NH-UV-68]
ATGATGTTACCCTCGCGCACGCCATTAAGTCATTATCACTGGAAAGGCATCAACACCGCTGGCAAACGTTGCTGCGGAAA
AATGCTCGCCAGTCACGAGAGTGACATTCGCCACCACTTAAAAAACAACTCGATCACCTTGCTGAGCCTCAAACGACGCA
ACAGCTCATTACTATCTCGCTGGCAACATAAAGCTCGCCCACAAGACATCACTGTCATGACACGCCAATTAGCCACCATG
TTAGCCAGTGGCGTGACGCTAGTGCATGCGCTCAAACTGATTAGCCATAACCAGCGTAAAGCCGAAATGAGACTGCTGAT
AACGCGCATGAGCGCTATTGTCGAATCTGGCACACCGATTTCACAGGCGATGGGGCAAACAAGCGTACTGTTTGATGACT
TCTATCGCGACCTGATCAAAGTCGGCGAACAGAGCGGTCGACTCAGCGACGTCATTGAGCGCCTGGCGACTTATCGTGAA
AAAAGTCAGCGCTTAAAAGCAAAACTTAAAACCGCCTTGATCTATCCCACTTTGGTTCTTGCCACCGCCATCATAGTCAG
TTATTTGATGCTGGCCTTCGTGGTCCCACAATTTGAAGCTATGTTTGCAGGTCTTGGCGCTCAACTACCATGGTTTACCC
AACAGGTACTAAAGGTGTCAAGATTCATCCAAAATTACACTGGCTATCTGCTGCTATCGATTGGCACTGTTATCTGGGGC
TGTCGTAAGCTAGTTTCGGTCTCGCCAATAATGCAGCTGCGCCTCAGCTCTTGGGTGTTAAAGCTACCGGTGGTTGGCAG
TGCGATTGAGAAGGCGGCCTTAAGCAAATTTTGCCGCTCTCTATCGACCAGCGTCAGTGCAGGCGTAGCGATACATCACG
GTTTAGCGAGCGCGATAAAAACCACACCTAATCACTATTACCAAGAGGCAATACAGCACGTTTTTGAACAAACTTTAGCG
GGTATGCCGATCTACATTGCTTTGCGTGAAAGAGGCGCTTTTCCAGCGTTAATGGTCCAAATGATCATGGTGGGTGAAGA
GTCTGGCCAACTTGATGACATGCTGAGAAAAGTGGCGGATATTTACCAATTGGAAATCGACAATCAAATCGAAAACCTCG
AGAAATCGCTCGAACCCTTAATGGTCTTACTACTCGGCACGATAGTCGGTAGTTTAGTGGTTGCGCTTTACTTACCTATC
TTTAACTTAATGAATGTCTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

51.87

98.284

0.51
  pilC Vibrio campbellii strain DS40M4

49.25

98.039

0.483