Detailed information NTG0884375

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ViNHUV68_RS02055
• Genome accession: NZ_CP134975
• Coordinates: 408848..409717 (-)
• Length: 289 a.a.
• NCBI ID: WP_391089080.1
• Uniprot ID: -
• Organism: Vibrio sp. NH-UV-68
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 403848..414717

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ViNHUV68_RS02020 (ViNHUV68_04080)	rpsP	405097..405345 (+)	249	WP_004742593.1	30S ribosomal protein S16	-
ViNHUV68_RS02025 (ViNHUV68_04090)	rimM	405371..405919 (+)	549	WP_038173822.1	ribosome maturation factor RimM	-
ViNHUV68_RS02030 (ViNHUV68_04100)	trmD	405945..406694 (+)	750	WP_038173823.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ViNHUV68_RS02035 (ViNHUV68_04110)	rplS	406743..407096 (+)	354	WP_038173824.1	50S ribosomal protein L19	-
ViNHUV68_RS02040 (ViNHUV68_04120)	yacG	407203..407397 (-)	195	WP_391089076.1	DNA gyrase inhibitor YacG	-
ViNHUV68_RS02045 (ViNHUV68_04130)	zapD	407463..408203 (-)	741	WP_391089078.1	cell division protein ZapD	-
ViNHUV68_RS02050 (ViNHUV68_04140)	coaE	408238..408846 (-)	609	WP_038173829.1	dephospho-CoA kinase	-
ViNHUV68_RS02055 (ViNHUV68_04150)	pilD	408848..409717 (-)	870	WP_391089080.1	prepilin peptidase	Machinery gene
ViNHUV68_RS02060 (ViNHUV68_04160)	pilC	409755..410981 (-)	1227	WP_391090239.1	type II secretion system F family protein	Machinery gene
ViNHUV68_RS02065 (ViNHUV68_04170)	pilB	410991..412682 (-)	1692	WP_391089082.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ViNHUV68_RS02070 (ViNHUV68_04180)	-	412682..413086 (-)	405	WP_391089084.1	pilin	-
ViNHUV68_RS02075 (ViNHUV68_04190)	nadC	413299..414186 (-)	888	WP_038173834.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32617.62 Da
• Isoelectric Point: 6.4697

>NTDB_id=884375 ViNHUV68_RS02055 WP_391089080.1 408848..409717(-) (pilD) [Vibrio sp. NH-UV-68]
MELFNDYPWLFAALASVFGLIIGSFLNVVIHRLPLIMEREWRQECAESFAEYHIEPPQGEFNLSVPRSRCPKCQQPVAIK
DNIPLFSWLRLKGRCRHCSESISIRYPLVELLSAALCLAIAYQQGFSYFSVALLFFTFTLIAATFIDLDTMLLPDQLTLP
LTWAGIALALLNISPLSLQDSVIGAMAGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPLIILLSSLVGL
IFGLIQLRLKQQGIDKAFPFGPYLAIAGWISMMWGESIMAWYFNQFLGM

Nucleotide

• Length: 870 bp

>NTDB_id=884375 ViNHUV68_RS02055 WP_391089080.1 408848..409717(-) (pilD) [Vibrio sp. NH-UV-68]
ATGGAACTATTTAACGATTACCCTTGGCTGTTTGCTGCCCTCGCAAGTGTGTTCGGTCTGATCATTGGCAGCTTTTTGAA
TGTTGTTATTCACCGCTTACCTTTGATCATGGAAAGAGAGTGGCGGCAAGAGTGCGCAGAAAGCTTTGCCGAATACCATA
TCGAGCCACCACAAGGAGAGTTTAACCTTAGTGTGCCGCGCTCACGTTGCCCCAAATGTCAGCAGCCTGTGGCAATAAAA
GATAATATTCCACTATTTAGTTGGTTACGCCTGAAAGGGCGATGTCGTCACTGCTCTGAATCGATTAGTATTCGCTACCC
TCTGGTTGAACTGCTAAGTGCGGCGCTCTGTTTGGCCATTGCCTACCAACAAGGGTTCAGCTATTTTTCCGTCGCTTTAT
TGTTTTTCACTTTTACTCTGATCGCCGCGACCTTTATCGACCTCGATACCATGCTGCTCCCCGATCAGCTAACTTTGCCC
TTAACGTGGGCGGGCATTGCCTTAGCGCTGCTTAATATCAGCCCACTCTCTTTGCAAGACTCAGTCATTGGGGCGATGGC
GGGTTATTTATCGCTCTGGTCGGTTTATTGGTTATTTAAACTACTCACCGGAAAAGAGGGCATGGGTTATGGCGACTTTA
AACTGCTCGCGGCGCTTGGGGCCTGGCTTGGCTGGCAGCATCTCCCACTGATCATTTTACTCTCCTCTTTAGTCGGATTA
ATCTTTGGCCTAATTCAGTTACGCCTCAAGCAGCAAGGCATAGATAAAGCTTTTCCCTTCGGTCCCTACCTAGCGATTGC
CGGCTGGATAAGCATGATGTGGGGCGAGTCGATTATGGCTTGGTATTTCAACCAATTCTTGGGGATGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-123)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	72.664	100	0.727
pilD	Vibrio cholerae strain A1552	70.833	99.654	0.706
pilD	Acinetobacter nosocomialis M2	50.182	95.156	0.478
pilD	Acinetobacter baumannii D1279779	49.818	95.156	0.474
pilD	Neisseria gonorrhoeae MS11	47.407	93.426	0.443