Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ViNHUV68_RS01095 Genome accession   NZ_CP134975
Coordinates   244366..244998 (-) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio sp. NH-UV-68     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 239366..249998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ViNHUV68_RS01075 (ViNHUV68_02180) - 239373..240587 (+) 1215 WP_391088954.1 acetylornithine/succinyldiaminopimelate transaminase -
  ViNHUV68_RS01080 (ViNHUV68_02190) astA 240714..241733 (+) 1020 WP_038175141.1 arginine N-succinyltransferase -
  ViNHUV68_RS01085 (ViNHUV68_02200) astD 241749..243206 (+) 1458 WP_038175142.1 succinylglutamate-semialdehyde dehydrogenase -
  ViNHUV68_RS01090 (ViNHUV68_02210) - 243369..244160 (+) 792 WP_038175143.1 DUF1338 domain-containing protein -
  ViNHUV68_RS01095 (ViNHUV68_02220) crp 244366..244998 (-) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  ViNHUV68_RS01100 (ViNHUV68_02230) - 245242..246111 (-) 870 WP_038175145.1 phosphoribulokinase -
  ViNHUV68_RS01105 (ViNHUV68_02240) - 246202..246414 (-) 213 WP_038175146.1 YheU family protein -
  ViNHUV68_RS01110 (ViNHUV68_02250) - 246458..247435 (-) 978 WP_391088957.1 hydrolase -
  ViNHUV68_RS01115 (ViNHUV68_02260) - 247445..247924 (-) 480 WP_391088959.1 TIGR02444 family protein -
  ViNHUV68_RS01120 (ViNHUV68_02270) - 247921..249843 (-) 1923 WP_038175151.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=884371 ViNHUV68_RS01095 WP_004410522.1 244366..244998(-) (crp) [Vibrio sp. NH-UV-68]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=884371 ViNHUV68_RS01095 WP_004410522.1 244366..244998(-) (crp) [Vibrio sp. NH-UV-68]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAATGGTTTCTTTCACATTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTGATCCATGCGGGCGAAAAAGCAGAAACTTTGTACTACATCGTAAAAGGTTCTGTGGCGGTACTTATCAAGG
ATGAAGAAGGTAAAGAAATGATTCTTTCTTACCTCAACCAAGGCGACTTTATTGGCGAACTTGGCTTGTTCGAAGAAGAT
CAAGAACGTACCGCATGGGTTCGAGCAAAATCTCCTTGTGAAGTCGCGGAGATTTCATTCAAGAAATTCCGTCAGCTAAT
TCAAGTTAACCCAGACATCTTAATGCGTCTGTCAGCGCAAATGGCAAGTCGTCTACAAGTGACAAGCCAAAAAGTCGGTG
ACCTTGCGTTCCTAGACGTTACTGGCCGTATCGCGCAAACGCTACTTAACCTTGCAAAACAACCTGATGCGATGACTCAC
CCAGACGGTATGCAAATCAAGATCACTCGTCAGGAAATCGGCCAAATTGTTGGCTGTTCTCGTGAGACTGTAGGTCGTAT
CTTGAAGATGCTTGAAGAGCAAAACTTAATTTCTGCCCACGGCAAAACTATTGTTGTGTACGGCACACGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467