Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   RI132_RS13540 Genome accession   NZ_CP134783
Coordinates   2919248..2919880 (+) Length   210 a.a.
NCBI ID   WP_011079297.1    Uniprot ID   -
Organism   Vibrio vulnificus strain GCU-01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2914248..2924880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI132_RS13520 (RI132_13520) - 2916137..2916616 (+) 480 WP_047112416.1 TIGR02444 family protein -
  RI132_RS13525 (RI132_13525) - 2916762..2917739 (+) 978 WP_047112418.1 hydrolase -
  RI132_RS13530 (RI132_13530) - 2917795..2918007 (+) 213 WP_011079299.1 YheU family protein -
  RI132_RS13535 (RI132_13535) - 2918136..2919005 (+) 870 WP_011151314.1 phosphoribulokinase -
  RI132_RS13540 (RI132_13540) crp 2919248..2919880 (+) 633 WP_011079297.1 cAMP-activated global transcriptional regulator CRP Regulator
  RI132_RS13545 (RI132_13545) - 2920091..2920882 (-) 792 WP_072616575.1 DUF1338 domain-containing protein -
  RI132_RS13550 (RI132_13550) astD 2921095..2922552 (-) 1458 WP_047112424.1 succinylglutamate-semialdehyde dehydrogenase -
  RI132_RS13555 (RI132_13555) astA 2922570..2923589 (-) 1020 WP_072616574.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23538.33 Da        Isoelectric Point: 7.8387

>NTDB_id=883749 RI132_RS13540 WP_011079297.1 2919248..2919880(+) (crp) [Vibrio vulnificus strain GCU-01]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=883749 RI132_RS13540 WP_011079297.1 2919248..2919880(+) (crp) [Vibrio vulnificus strain GCU-01]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTCATTCATGCGGGCGAAAAAGCAGAAACGCTTTACTACATCGTAAAAGGTTCTGTTGCGGTACTGATTAAGG
ATGAAGAAGGTAAAGAAATGATCCTTTCTTACCTAAATCAAGGTGACTTTATTGGTGAACTAGGCCTGTTCGAAGAAGGT
CAAGAGCGTACCGCATGGGTTCGTGCAAAATCACCTTGTGAAGTCGCAGAAATCTCATTCAAGAAATTCCGTCAGCTCAT
TCAGGTCAACCCTGACATCCTGATGCGTCTATCTGCTCAGATGGCAAGCCGTCTGCAAGTGACCAGCCAAAAAGTGGGTG
ACTTAGCATTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTATTGAATCTGGCTAAACAACCAGATGCGATGACGCAC
CCAGATGGCATGCAGATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTCGAAGAGCAGAACCTGATTTCTGCACACGGCAAGACTATCGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467