Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   RND59_RS04475 Genome accession   NZ_CP134780
Coordinates   964373..965005 (+) Length   210 a.a.
NCBI ID   WP_038179153.1    Uniprot ID   -
Organism   Vibrio ruber strain HNIBRBA4764     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 959373..970005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RND59_RS04455 (RND59_04455) - 961159..961641 (+) 483 WP_077336334.1 TIGR02444 family protein -
  RND59_RS04460 (RND59_04460) - 961676..962683 (+) 1008 WP_311846607.1 hydrolase -
  RND59_RS04465 (RND59_04465) - 962888..963100 (+) 213 WP_077336331.1 YheU family protein -
  RND59_RS04470 (RND59_04470) - 963220..964089 (+) 870 WP_059119750.1 phosphoribulokinase -
  RND59_RS04475 (RND59_04475) crp 964373..965005 (+) 633 WP_038179153.1 cAMP-activated global transcriptional regulator CRP Regulator
  RND59_RS04480 (RND59_04480) - 965106..965906 (-) 801 WP_311846169.1 DUF1338 domain-containing protein -
  RND59_RS04485 (RND59_04485) astA 965971..966993 (-) 1023 WP_077336329.1 arginine N-succinyltransferase -
  RND59_RS04490 (RND59_04490) - 967088..968299 (-) 1212 WP_311846170.1 aspartate aminotransferase family protein -
  RND59_RS04495 (RND59_04495) - 968562..969140 (-) 579 WP_311846171.1 aminodeoxychorismate/anthranilate synthase component II -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23508.30 Da        Isoelectric Point: 7.8387

>NTDB_id=883660 RND59_RS04475 WP_038179153.1 964373..965005(+) (crp) [Vibrio ruber strain HNIBRBA4764]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLAGQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=883660 RND59_RS04475 WP_038179153.1 964373..965005(+) (crp) [Vibrio ruber strain HNIBRBA4764]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTTCTTTCACATTGTCACATACATAAATACCCTTCAAA
GAGTACGCTGATTCATGCAGGCGAAAAAGCGGAAACGCTTTATTACATCGTGAAGGGATCTGTTGCTGTTCTGATCAAGG
ATGAAGAAGGGAAAGAAATGATCCTTTCTTACCTCAATCAGGGTGACTTCATCGGTGAACTTGGTTTATTCGAAGAAGGT
CAAGAACGAACAGCTTGGGTCAGAGCGAAATCTCCCTGCGAAGTTGCAGAAATTTCCTTCAAAAAGTTCCGTCAGTTAAT
TCAGGTCAATCCAGACATTTTGATGCGTCTGGCAGGACAGATGGCGAGTCGCCTTCAAGTCACCAGCCAGAAAGTCGGTG
ATCTGGCTTTTCTGGATGTTACTGGTCGTATTGCACAGACGCTGTTGAATCTGGCAAAACAACCTGATGCAATGACGCAT
CCGGACGGAATGCAAATCAAGATTACCCGTCAGGAGATCGGCCAGATTGTCGGCTGTTCGCGCGAAACCGTTGGCCGCAT
TTTGAAAATGCTCGAAGAGCAGAACCTTATTTCTGCCCACGGAAAAACAATCGTCGTTTACGGTACGAGATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462