Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RMQ99_RS18970 Genome accession   NZ_CP134777
Coordinates   4158022..4160247 (-) Length   741 a.a.
NCBI ID   WP_236318097.1    Uniprot ID   -
Organism   Pseudomonas canadensis strain Q3-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4153022..4165247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ99_RS18935 (RMQ99_18935) murB 4153427..4154446 (-) 1020 WP_068936826.1 UDP-N-acetylmuramate dehydrogenase -
  RMQ99_RS18940 (RMQ99_18940) - 4154443..4154907 (-) 465 WP_010209653.1 low molecular weight protein-tyrosine-phosphatase -
  RMQ99_RS18945 (RMQ99_18945) kdsB 4154907..4155671 (-) 765 WP_028616766.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RMQ99_RS18950 (RMQ99_18950) - 4155668..4155853 (-) 186 WP_003174668.1 Trm112 family protein -
  RMQ99_RS18955 (RMQ99_18955) lpxK 4155878..4156888 (-) 1011 WP_311892844.1 tetraacyldisaccharide 4'-kinase -
  RMQ99_RS18960 (RMQ99_18960) - 4156888..4157316 (-) 429 WP_010209650.1 biopolymer transporter ExbD -
  RMQ99_RS18965 (RMQ99_18965) exbB 4157313..4157948 (-) 636 WP_016978182.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RMQ99_RS18970 (RMQ99_18970) comA 4158022..4160247 (-) 2226 WP_236318097.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RMQ99_RS18975 (RMQ99_18975) - 4160383..4160898 (+) 516 WP_012724913.1 DUF2062 domain-containing protein -
  RMQ99_RS18980 (RMQ99_18980) - 4160895..4162265 (-) 1371 WP_122683830.1 sensor histidine kinase -
  RMQ99_RS18985 (RMQ99_18985) - 4162252..4162980 (-) 729 WP_068936835.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80481.44 Da        Isoelectric Point: 10.4398

>NTDB_id=883638 RMQ99_RS18970 WP_236318097.1 4158022..4160247(-) (comA) [Pseudomonas canadensis strain Q3-1]
MRTGMCAFALGLLALRFLPALPTTGWLIALLVLALMLLPFRTYPLAFFLFGLSWACMSAQWALDDRLKPVLDGQTRWVEG
RVSGLPQQTDEGVRFVLTDSRSRNARLPTHIRVSWRGGPPVRSGERWRLAVTLKRPAGLLNFHGFDQEAWLLAQRIGATG
TVKDGERLAPAANAWRDSVRQRLLAVDAQGREAGLIALVLGDGSGLAAADWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGCWPRTWPWLPWACGLAFTTALGYGLLAGFGVPVQRACVMVGLVLLWRLRLRHLGLWWPLLLALNGVLILEPL
ASLQPGFWLSFAAVAVLILAFGGRLGPWSLWQVWTRPQWLIAIGLFPALLVLGLPISLSAPFANLVAVPWISLVVLPLAL
LGTALLALPFVGEGLLWLAGGALGALFNGLAWLAGQMPAWIPADVPLGYWLVSLLGAVLLLLPKGVPFRVLGWPMFLLAV
FPPRALVPDGQVEVTQLDVGQGQSLILRTRHHTLLYDAGPRSGTFDLGARVVLPSLRKLGVGELDMLLLSHADADHAGGA
AAIANGMPIKRVVGGETEGLPPSLATQPCTSGERWIWDGVTFELWQWPDAISGNAKSCVLQVQANGERLLLTGDIGRAAE
QAMLASPLAVPTDWLQAPHHGSRSSSSWPFVERLAPRSVLISRGRNNAFGHPHPQVMERYQRLGSQVYDSAEQGAVRLQL
GAFTLPIVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=883638 RMQ99_RS18970 WP_236318097.1 4158022..4160247(-) (comA) [Pseudomonas canadensis strain Q3-1]
ATGAGGACAGGGATGTGCGCGTTTGCGCTGGGGCTGCTGGCCTTGCGCTTTTTACCGGCATTGCCGACGACCGGTTGGCT
GATCGCCTTGCTGGTGCTGGCCCTGATGCTGTTGCCGTTTCGCACGTATCCCTTGGCTTTTTTCCTGTTTGGGCTGAGTT
GGGCGTGCATGAGCGCGCAGTGGGCGCTGGATGATCGCCTCAAGCCAGTACTGGACGGTCAGACGCGCTGGGTGGAAGGG
CGGGTCAGCGGGCTTCCGCAACAGACGGACGAGGGCGTGCGCTTTGTACTGACCGACAGTCGGTCGCGTAATGCCCGGTT
GCCCACGCACATCCGGGTGTCCTGGCGTGGCGGGCCGCCCGTGCGCAGCGGTGAACGCTGGCGCCTCGCCGTCACCCTCA
AGCGGCCCGCCGGGTTGCTGAACTTCCACGGCTTTGATCAGGAGGCTTGGCTGCTGGCCCAGCGCATTGGCGCCACCGGT
ACGGTAAAGGATGGAGAGCGCCTGGCACCGGCTGCCAACGCCTGGCGCGACAGTGTGCGTCAGCGTTTGCTTGCGGTGGA
CGCCCAAGGCCGGGAGGCTGGCCTGATTGCCCTGGTGTTGGGCGATGGCTCTGGATTGGCGGCTGCTGATTGGCAGGTGC
TGCAGGACACAGGGACTGTGCATTTGCTGGTCATCTCCGGCCAGCATATCGGCCTGCTGGCGGGGTTGATTTACGGTTTG
ATCGCTGGCTTGGCGCGCTATGGATGCTGGCCTCGAACCTGGCCATGGCTGCCCTGGGCTTGTGGGCTGGCGTTCACTAC
GGCGCTGGGTTACGGCTTGCTGGCTGGATTTGGCGTGCCGGTGCAGCGCGCCTGCGTGATGGTTGGGCTGGTGTTGTTGT
GGCGATTGCGCTTGCGTCACCTGGGGCTGTGGTGGCCTTTGTTGCTGGCGCTCAATGGGGTGCTGATCCTGGAGCCGTTG
GCCAGCTTGCAGCCGGGGTTCTGGCTGTCCTTTGCGGCGGTTGCGGTGCTGATCCTGGCGTTTGGTGGCCGGCTGGGACC
CTGGAGCCTGTGGCAGGTGTGGACTCGGCCGCAGTGGTTGATTGCCATCGGGTTGTTTCCGGCCTTGCTGGTGTTGGGGC
TGCCCATTAGCCTGAGTGCGCCGTTTGCCAACCTGGTGGCGGTGCCATGGATCAGCCTGGTGGTGTTGCCGCTGGCCTTG
TTGGGCACTGCATTGCTGGCGTTGCCGTTTGTAGGGGAAGGTCTGCTGTGGCTGGCGGGCGGGGCACTGGGTGCCTTGTT
CAACGGCTTGGCGTGGCTCGCCGGACAGATGCCGGCCTGGATTCCGGCCGATGTACCGCTGGGGTATTGGTTGGTAAGTC
TGCTGGGCGCAGTGCTGCTCCTGCTGCCCAAGGGCGTGCCGTTTCGTGTGTTGGGTTGGCCGATGTTTCTGCTGGCGGTG
TTTCCCCCACGAGCGCTGGTGCCCGACGGACAGGTGGAGGTGACGCAGCTTGATGTCGGCCAGGGGCAATCGTTGATTTT
GCGCACCCGTCATCACACGTTGCTCTACGACGCCGGCCCGCGTTCCGGCACGTTCGACTTGGGTGCGCGCGTGGTACTGC
CGTCTTTGCGAAAGCTCGGGGTAGGAGAGCTGGATATGCTGCTGCTCAGCCACGCCGATGCCGATCACGCCGGGGGTGCA
GCGGCGATTGCCAATGGCATGCCGATCAAGCGTGTGGTGGGCGGAGAAACTGAAGGTCTGCCCCCATCGCTCGCCACCCA
GCCTTGCACCAGCGGCGAGCGCTGGATCTGGGACGGTGTGACCTTCGAACTCTGGCAGTGGCCGGACGCCATAAGTGGCA
ACGCGAAGTCCTGCGTCTTGCAGGTGCAGGCCAATGGCGAGCGCCTGCTGCTGACCGGTGATATTGGCCGTGCGGCGGAA
CAGGCCATGCTTGCGTCACCGCTGGCGGTGCCCACCGATTGGCTGCAAGCGCCGCACCATGGCAGTCGCAGTTCTTCGTC
CTGGCCCTTTGTGGAACGGCTTGCTCCGCGATCCGTGCTGATCTCGCGAGGGCGCAACAATGCGTTCGGCCATCCCCATC
CACAGGTGATGGAACGCTACCAGCGGTTGGGCAGCCAGGTATATGACAGCGCCGAGCAGGGCGCCGTACGTCTGCAGTTG
GGTGCTTTTACGCTTCCGATAGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAGCGGTTACCCTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.278

97.166

0.586
  comA Ralstonia pseudosolanacearum GMI1000

34.293

100

0.37