Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RMQ99_RS18965 Genome accession   NZ_CP134777
Coordinates   4157313..4157948 (-) Length   211 a.a.
NCBI ID   WP_016978182.1    Uniprot ID   A0A223VS35
Organism   Pseudomonas canadensis strain Q3-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4152313..4162948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ99_RS18930 (RMQ99_18930) - 4152693..4153364 (+) 672 WP_016977342.1 Bax inhibitor-1/YccA family protein -
  RMQ99_RS18935 (RMQ99_18935) murB 4153427..4154446 (-) 1020 WP_068936826.1 UDP-N-acetylmuramate dehydrogenase -
  RMQ99_RS18940 (RMQ99_18940) - 4154443..4154907 (-) 465 WP_010209653.1 low molecular weight protein-tyrosine-phosphatase -
  RMQ99_RS18945 (RMQ99_18945) kdsB 4154907..4155671 (-) 765 WP_028616766.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RMQ99_RS18950 (RMQ99_18950) - 4155668..4155853 (-) 186 WP_003174668.1 Trm112 family protein -
  RMQ99_RS18955 (RMQ99_18955) lpxK 4155878..4156888 (-) 1011 WP_311892844.1 tetraacyldisaccharide 4'-kinase -
  RMQ99_RS18960 (RMQ99_18960) - 4156888..4157316 (-) 429 WP_010209650.1 biopolymer transporter ExbD -
  RMQ99_RS18965 (RMQ99_18965) exbB 4157313..4157948 (-) 636 WP_016978182.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RMQ99_RS18970 (RMQ99_18970) comA 4158022..4160247 (-) 2226 WP_236318097.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RMQ99_RS18975 (RMQ99_18975) - 4160383..4160898 (+) 516 WP_012724913.1 DUF2062 domain-containing protein -
  RMQ99_RS18980 (RMQ99_18980) - 4160895..4162265 (-) 1371 WP_122683830.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22889.05 Da        Isoelectric Point: 7.3615

>NTDB_id=883637 RMQ99_RS18965 WP_016978182.1 4157313..4157948(-) (exbB) [Pseudomonas canadensis strain Q3-1]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWSWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=883637 RMQ99_RS18965 WP_016978182.1 4157313..4157948(-) (exbB) [Pseudomonas canadensis strain Q3-1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTTCGCGCCAGCCGCGTGACCCCCGAGCATTTGCTGGGGCAGGTCTGGTCCTGGATCAAGAACA
AACAGCTCGATAAGGAAAAACTCAAGGAGCTGCGCGCCAATTCCCCGTTGGGTGAGATCCTCGCTGCCGGGCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGCGTCATCCATGAACTGGAACGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGTTGCTCGGCTTGCTCGGTACGGTGTTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCCGGCATGACCACCAACGCGGCCGTACTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACGGCC
GCAGGCCTGATGGTGGGTATTCCCTCGGTGTTCTTCCACCGCTTCCTGCAACGCCGTATCGATGAGCTTGTGGTGGGCAT
GGAGCAGGAAGCCATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223VS35

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848