Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RMV18_RS21705 Genome accession   NZ_CP134774
Coordinates   4870793..4873027 (-) Length   744 a.a.
NCBI ID   WP_311882466.1    Uniprot ID   -
Organism   Pseudomonas sp. VD-NE ext     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4865793..4878027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMV18_RS21670 murB 4866173..4867192 (-) 1020 WP_311882456.1 UDP-N-acetylmuramate dehydrogenase -
  RMV18_RS21675 - 4867189..4867653 (-) 465 WP_311882458.1 low molecular weight protein-tyrosine-phosphatase -
  RMV18_RS21680 kdsB 4867653..4868417 (-) 765 WP_034155367.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RMV18_RS21685 - 4868414..4868599 (-) 186 WP_003174668.1 Trm112 family protein -
  RMV18_RS21690 lpxK 4868621..4869631 (-) 1011 WP_311882461.1 tetraacyldisaccharide 4'-kinase -
  RMV18_RS21695 - 4869631..4870059 (-) 429 WP_007908223.1 biopolymer transporter ExbD -
  RMV18_RS21700 exbB 4870056..4870691 (-) 636 WP_007908216.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RMV18_RS21705 comA 4870793..4873027 (-) 2235 WP_311882466.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RMV18_RS21710 - 4873164..4873682 (+) 519 WP_034155370.1 DUF2062 domain-containing protein -
  RMV18_RS21715 - 4873830..4874609 (-) 780 WP_008087860.1 ABC transporter permease -
  RMV18_RS21720 - 4874606..4875538 (-) 933 WP_102900039.1 ABC transporter ATP-binding protein -
  RMV18_RS21725 - 4875662..4876285 (-) 624 WP_311882471.1 glutathione S-transferase -
  RMV18_RS21730 - 4876329..4876988 (-) 660 WP_311882473.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 82002.09 Da        Isoelectric Point: 9.1649

>NTDB_id=883533 RMV18_RS21705 WP_311882466.1 4870793..4873027(-) (comA) [Pseudomonas sp. VD-NE ext]
MRTGMMALAVGLLAPVFMPALPPVWLMLLLPVAALMLLPFRSYPLAFLLLGFTWASVGAQWALNDCLPTELDGETRWLEG
RVVGLPQNSDGVVRFELADARSRHEELPSLVRLAWYGGPPVNSGERWRLAVKLKRAAGLRNPDAFDYEAWLLAQRIGATG
TIKDGQRLSEARWAWRDSIRQRLLSVDAQGRSGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAAVMYML
VAGLARFGLWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVGLVLLWRLRFLHLGAWWPLLLAFNAVLLLDPL
ASLRPGFWLSFTAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLIALNLPISLSGPLANLLAVPWISLVALPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFRTLALIAGQWPAWTAPSISSWVWILGSLGALLLLLPRGVPLRPLGWPLLLILV
VPPRERLDEGLADVWQIDVGQGLAILIRTRHHTLLYDAGPRFGDFDLGERVVLPALRKLSVDNLDLMLLSHADADHAGGA
LAIARGMPVARVLSGDPPGLPAELNAEACESGQQWQWDGVRFQLWMWADAQDSNQRSCVLQIEANGERLLLTGDIDVHAE
RVLLDSPLAVPTQWLQAPHHGSRSSSSMALLKALKPESVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEQGAIQLQL
GRFQAPWTMRHQRRFWRDPPALAR

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=883533 RMV18_RS21705 WP_311882466.1 4870793..4873027(-) (comA) [Pseudomonas sp. VD-NE ext]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTATGCCGGCATTACCGCCGGTCTGGTTGAT
GCTGTTGCTGCCGGTGGCGGCTTTGATGTTGCTGCCGTTTCGCAGCTATCCGTTGGCGTTTTTGCTGTTGGGTTTCACTT
GGGCCAGCGTCGGTGCGCAATGGGCGTTGAATGATTGTTTGCCGACTGAACTGGATGGCGAAACCCGCTGGCTCGAAGGA
CGGGTCGTCGGTTTGCCGCAGAACAGCGACGGCGTGGTGCGTTTCGAACTGGCTGATGCGCGCTCGCGTCACGAAGAACT
GCCATCGCTGGTGCGGCTTGCCTGGTACGGCGGGCCACCGGTCAACAGCGGCGAGCGTTGGCGATTGGCGGTCAAACTCA
AGCGTGCGGCTGGTTTACGCAATCCGGACGCTTTCGATTATGAGGCGTGGCTGCTGGCGCAACGCATCGGCGCCACCGGC
ACGATCAAGGACGGCCAACGTCTGAGCGAAGCGCGCTGGGCCTGGCGCGACAGTATTCGTCAGCGTTTGCTGAGCGTGGA
TGCGCAGGGGCGAAGCGGCGCACTGGCGGCGCTGGTGCTGGGCGACGGTTCGGGACTCAGTCGTGAGGATTGGCAGATTC
TGCAGGACACCGGCACCGTGCACTTGCTGGTGATTTCCGGTCAGCACATCGGGTTGCTGGCGGCGGTGATGTACATGCTG
GTCGCCGGATTGGCCCGTTTTGGCCTGTGGCCGCTGCGCTGGCCCTGGCTGCCGTGGGCCTGTGGTCTGGCATTTGCGGC
GGCGCTCGGTTATGGCCTGCTCGCCGGATTCGACGTGCCGGTACAGCGCGCCTGCGTGATGGTCGGTCTGGTGCTGTTGT
GGCGCCTGCGCTTTCTTCATCTCGGTGCGTGGTGGCCGTTGTTGCTGGCGTTCAATGCGGTGCTCTTGCTCGATCCGCTG
GCCAGTCTGCGCCCCGGTTTCTGGTTGTCCTTTACGGCTGTTGCAGTGTTGATCTTCACATTTGGCGGTCGACTGGGCGC
GTGGCGTTGGTGGCAAACCTGGACGCGGGCGCAGTGGTTGATTGCCATCGGTTTATGCCCGGTACTGATTGCGCTGAACC
TGCCGATCAGTTTGAGCGGGCCACTGGCAAATTTGCTCGCGGTGCCTTGGATCAGTCTGGTGGCGCTGCCGCCGGCACTC
CTCGGGACTTTATTGCTGCCAGTGCCGTATGTCGGCGAAGGACTGCTGTGGCTGGCCGGCGGCTTGATCGATTGGCTGTT
TCGCACACTGGCGCTGATTGCCGGGCAATGGCCTGCATGGACAGCGCCGTCGATATCGAGCTGGGTGTGGATTCTCGGCA
GTCTCGGTGCCTTGCTGTTGCTATTGCCCCGCGGCGTGCCGCTGCGCCCACTGGGCTGGCCGTTGCTGCTGATTCTAGTG
GTACCGCCGCGCGAGCGATTGGACGAGGGATTGGCCGATGTTTGGCAGATCGATGTCGGGCAGGGCCTGGCAATCCTGAT
CCGAACCCGGCATCACACGCTGCTCTACGACGCCGGCCCGCGTTTTGGCGATTTCGATCTCGGTGAACGCGTGGTGCTAC
CGGCCTTGCGCAAACTCAGCGTGGACAATCTCGATCTGATGCTGCTCAGTCACGCCGACGCCGATCATGCCGGCGGTGCG
CTGGCGATTGCGCGGGGTATGCCGGTCGCGCGGGTACTCAGCGGCGATCCGCCGGGGCTACCTGCTGAATTGAATGCTGA
AGCCTGCGAGAGCGGCCAGCAATGGCAATGGGACGGCGTGCGTTTTCAACTGTGGATGTGGGCGGACGCCCAGGACAGTA
ACCAGCGCTCCTGCGTGTTGCAGATCGAGGCCAATGGCGAGCGACTGCTGCTGACCGGCGATATCGATGTCCATGCCGAG
CGCGTTCTGCTCGACAGTCCTTTGGCCGTGCCGACGCAATGGCTGCAAGCGCCCCATCATGGCAGCCGCAGTTCGTCATC
CATGGCGCTGCTCAAGGCGCTAAAGCCTGAGTCCGTGCTGATCTCCCGAGGCCACGGCAATTCCTTCGGCCATCCACACC
CGACCGTGCTGGCGCGTTATCGCAAACAAGGCCTGCGCATCTATGACAGCGCCGAGCAGGGCGCCATTCAGCTACAACTG
GGTCGCTTCCAAGCGCCGTGGACGATGCGTCATCAGCGGCGTTTCTGGCGTGATCCGCCCGCACTGGCCCGCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.989

96.237

0.606
  comA Ralstonia pseudosolanacearum GMI1000

33.689

100

0.382