Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RMV18_RS21700 Genome accession   NZ_CP134774
Coordinates   4870056..4870691 (-) Length   211 a.a.
NCBI ID   WP_007908216.1    Uniprot ID   J2QQ31
Organism   Pseudomonas sp. VD-NE ext     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4865056..4875691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMV18_RS21665 - 4865390..4865860 (-) 471 WP_311882454.1 2Fe-2S iron-sulfur cluster-binding protein -
  RMV18_RS21670 murB 4866173..4867192 (-) 1020 WP_311882456.1 UDP-N-acetylmuramate dehydrogenase -
  RMV18_RS21675 - 4867189..4867653 (-) 465 WP_311882458.1 low molecular weight protein-tyrosine-phosphatase -
  RMV18_RS21680 kdsB 4867653..4868417 (-) 765 WP_034155367.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RMV18_RS21685 - 4868414..4868599 (-) 186 WP_003174668.1 Trm112 family protein -
  RMV18_RS21690 lpxK 4868621..4869631 (-) 1011 WP_311882461.1 tetraacyldisaccharide 4'-kinase -
  RMV18_RS21695 - 4869631..4870059 (-) 429 WP_007908223.1 biopolymer transporter ExbD -
  RMV18_RS21700 exbB 4870056..4870691 (-) 636 WP_007908216.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RMV18_RS21705 comA 4870793..4873027 (-) 2235 WP_311882466.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RMV18_RS21710 - 4873164..4873682 (+) 519 WP_034155370.1 DUF2062 domain-containing protein -
  RMV18_RS21715 - 4873830..4874609 (-) 780 WP_008087860.1 ABC transporter permease -
  RMV18_RS21720 - 4874606..4875538 (-) 933 WP_102900039.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22943.04 Da        Isoelectric Point: 6.8771

>NTDB_id=883532 RMV18_RS21700 WP_007908216.1 4870056..4870691(-) (exbB) [Pseudomonas sp. VD-NE ext]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=883532 RMV18_RS21700 WP_007908216.1 4870056..4870691(-) (exbB) [Pseudomonas sp. VD-NE ext]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCGGCCATGGCGATTGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGCCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAATAAAGAAAAACTCAAGGAGTTGCGCGCCAATTCGCCGCTGGGGGAAATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATTCACGAACTCGAGCGCTACGT
TAACGCGCTAGGCACGATTGCCGCCATGTCGCCGTTGCTCGGTCTGCTGGGCACCGTGTTAGGCATGATCGACATTTTCA
GCGCCTTCACTGGCTCAGGCATGACCACCAACGCCTCGGTATTGGCCGGTGGTATTTCCAAAGCGCTGATCACCACCGCT
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGCTTCCTGCAACGCCGCATCGATGAATTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTTGAAGTGGTGCAGGGCGATCGTGACGTCGACCTGGCCGAGGGCCGCGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2QQ31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848