Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   QDT75_RS01645 Genome accession   NZ_CP151078
Coordinates   352600..353076 (+) Length   158 a.a.
NCBI ID   WP_108510026.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain PUMA0052     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347600..358076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDT75_RS01635 (QDT75_01635) - 348108..348890 (+) 783 WP_031963609.1 pilus assembly PilX N-terminal domain-containing protein -
  QDT75_RS01640 (QDT75_01640) - 348906..352586 (+) 3681 WP_272304269.1 PilC/PilY family type IV pilus protein -
  QDT75_RS01645 (QDT75_01645) pilY2 352600..353076 (+) 477 WP_108510026.1 type IV pilin protein Machinery gene
  QDT75_RS01650 (QDT75_01650) pilE 353070..353534 (+) 465 WP_004745412.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QDT75_RS01655 (QDT75_01655) rpsP 353682..353933 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  QDT75_RS01660 (QDT75_01660) rimM 353953..354501 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  QDT75_RS01665 (QDT75_01665) trmD 354547..355287 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QDT75_RS01670 (QDT75_01670) rplS 355495..355863 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  QDT75_RS01675 (QDT75_01675) - 355916..356857 (-) 942 WP_279722749.1 triacylglycerol lipase -
  QDT75_RS01680 (QDT75_01680) - 356972..358003 (-) 1032 WP_249497882.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17405.95 Da        Isoelectric Point: 9.7307

>NTDB_id=883367 QDT75_RS01645 WP_108510026.1 352600..353076(+) (pilY2) [Acinetobacter baumannii strain PUMA0052]
MKRKFTYSLGFTLIEVMVVVVIVAIFAAVAIPSYQAYVLRADASRAEQEIQKISIQLNRHKSRNFNYKGFSTGAAAPVIL
PVGATGDAVKYQITIRDGDDTSKPLTDPTALGQNWVIRAEASDPYNFTYLFSSNGLRCKNKATSNVTYITCGIGAERW

Nucleotide


Download         Length: 477 bp        

>NTDB_id=883367 QDT75_RS01645 WP_108510026.1 352600..353076(+) (pilY2) [Acinetobacter baumannii strain PUMA0052]
ATGAAACGTAAATTCACATATTCTTTGGGCTTCACTCTTATTGAGGTAATGGTTGTGGTGGTGATTGTTGCTATTTTTGC
GGCAGTTGCAATACCTTCATATCAAGCCTATGTTTTGCGTGCGGATGCTTCGCGCGCAGAACAGGAAATCCAGAAAATTT
CCATACAACTCAATCGTCATAAATCTAGAAATTTTAATTATAAAGGTTTTTCTACAGGTGCTGCTGCGCCAGTAATTTTG
CCTGTTGGAGCGACTGGTGATGCTGTTAAATATCAAATAACAATCCGAGATGGTGATGATACTTCGAAACCTTTAACAGA
TCCTACAGCTTTAGGGCAAAACTGGGTAATTCGAGCAGAGGCTTCCGATCCTTATAATTTTACTTATTTATTTAGTAGTA
ATGGATTACGTTGTAAAAATAAAGCCACTAGCAATGTTACTTATATAACTTGTGGCATTGGAGCTGAGCGGTGGTAA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(32-100)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

45.625

100

0.462
  comE Acinetobacter baylyi ADP1

41.818

100

0.437