Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   QDT75_RS01650 Genome accession   NZ_CP151078
Coordinates   353070..353534 (+) Length   154 a.a.
NCBI ID   WP_004745412.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain PUMA0052     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 348070..358534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDT75_RS01635 (QDT75_01635) - 348108..348890 (+) 783 WP_031963609.1 pilus assembly PilX N-terminal domain-containing protein -
  QDT75_RS01640 (QDT75_01640) - 348906..352586 (+) 3681 WP_272304269.1 PilC/PilY family type IV pilus protein -
  QDT75_RS01645 (QDT75_01645) pilY2 352600..353076 (+) 477 WP_108510026.1 type IV pilin protein Machinery gene
  QDT75_RS01650 (QDT75_01650) pilE 353070..353534 (+) 465 WP_004745412.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QDT75_RS01655 (QDT75_01655) rpsP 353682..353933 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  QDT75_RS01660 (QDT75_01660) rimM 353953..354501 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  QDT75_RS01665 (QDT75_01665) trmD 354547..355287 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QDT75_RS01670 (QDT75_01670) rplS 355495..355863 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  QDT75_RS01675 (QDT75_01675) - 355916..356857 (-) 942 WP_279722749.1 triacylglycerol lipase -
  QDT75_RS01680 (QDT75_01680) - 356972..358003 (-) 1032 WP_249497882.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16812.42 Da        Isoelectric Point: 9.3896

>NTDB_id=883368 QDT75_RS01650 WP_004745412.1 353070..353534(+) (pilE) [Acinetobacter baumannii strain PUMA0052]
MVNKIKGFTLIELMIAVAIIAVLAAIAYPSYLEHVRHTKRVEMQTTLQQIAMQIQRYKIANFKVVGATSSDFNIAASYPV
QGTPLYIVNLTPVTSGSLTAETWILTATPIANTPQSGDGHIVLNYRGERCWTKGTDINSGRACVPSVTSNWDGK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=883368 QDT75_RS01650 WP_004745412.1 353070..353534(+) (pilE) [Acinetobacter baumannii strain PUMA0052]
GTGGTAAATAAAATAAAAGGTTTTACCTTAATTGAGTTAATGATTGCTGTAGCAATTATTGCGGTTTTAGCAGCGATAGC
TTATCCCTCTTATCTGGAGCATGTCCGTCATACCAAACGTGTGGAAATGCAAACTACTTTGCAACAGATTGCTATGCAGA
TTCAGCGATACAAGATTGCAAACTTTAAAGTAGTTGGAGCAACAAGTTCAGATTTTAATATTGCAGCATCCTATCCAGTA
CAAGGTACGCCTCTTTATATAGTCAATCTGACCCCTGTTACATCAGGTTCTTTGACTGCTGAAACATGGATATTAACTGC
GACACCGATTGCAAATACTCCACAATCTGGAGATGGGCATATTGTCTTAAATTATCGTGGTGAACGGTGCTGGACAAAAG
GGACCGATATTAACAGTGGTAGGGCTTGTGTTCCTTCTGTGACCTCGAATTGGGATGGCAAGTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-28)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

44.898

95.455

0.429
  comF Acinetobacter baylyi ADP1

43.919

96.104

0.422