Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   RJY17_RS08410 Genome accession   NZ_CP134692
Coordinates   1578399..1579088 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain B5     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1573399..1584088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJY17_RS08375 (RJY17_08375) - 1573596..1574078 (-) 483 WP_003151394.1 flagellar protein FlgN -
  RJY17_RS08380 (RJY17_08380) flgM 1574093..1574359 (-) 267 WP_094032533.1 flagellar biosynthesis anti-sigma factor FlgM -
  RJY17_RS08385 (RJY17_08385) - 1574429..1574848 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  RJY17_RS08390 (RJY17_08390) comFC 1574922..1575611 (-) 690 WP_217898730.1 phosphoribosyltransferase family protein Machinery gene
  RJY17_RS08395 (RJY17_08395) - 1575617..1575901 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  RJY17_RS08400 (RJY17_08400) comFA 1575959..1577344 (-) 1386 WP_094032535.1 DEAD/DEAH box helicase Machinery gene
  RJY17_RS08405 (RJY17_08405) - 1577453..1578301 (-) 849 WP_003151387.1 DegV family protein -
  RJY17_RS08410 (RJY17_08410) degU 1578399..1579088 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RJY17_RS08415 (RJY17_08415) degS 1579165..1580328 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  RJY17_RS08420 (RJY17_08420) - 1580551..1581198 (+) 648 WP_061581228.1 YigZ family protein -
  RJY17_RS08425 (RJY17_08425) - 1581203..1582438 (+) 1236 WP_025285355.1 LCP family protein -
  RJY17_RS08430 (RJY17_08430) - 1582537..1583613 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=882880 RJY17_RS08410 WP_003219701.1 1578399..1579088(-) (degU) [Bacillus velezensis strain B5]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=882880 RJY17_RS08410 WP_003219701.1 1578399..1579088(-) (degU) [Bacillus velezensis strain B5]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1