Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   RJY17_RS08400 Genome accession   NZ_CP134692
Coordinates   1575959..1577344 (-) Length   461 a.a.
NCBI ID   WP_094032535.1    Uniprot ID   -
Organism   Bacillus velezensis strain B5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1570959..1582344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJY17_RS08365 (RJY17_08365) flgL 1571134..1572051 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  RJY17_RS08370 (RJY17_08370) flgK 1572063..1573580 (-) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  RJY17_RS08375 (RJY17_08375) - 1573596..1574078 (-) 483 WP_003151394.1 flagellar protein FlgN -
  RJY17_RS08380 (RJY17_08380) flgM 1574093..1574359 (-) 267 WP_094032533.1 flagellar biosynthesis anti-sigma factor FlgM -
  RJY17_RS08385 (RJY17_08385) - 1574429..1574848 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  RJY17_RS08390 (RJY17_08390) comFC 1574922..1575611 (-) 690 WP_217898730.1 phosphoribosyltransferase family protein Machinery gene
  RJY17_RS08395 (RJY17_08395) - 1575617..1575901 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  RJY17_RS08400 (RJY17_08400) comFA 1575959..1577344 (-) 1386 WP_094032535.1 DEAD/DEAH box helicase Machinery gene
  RJY17_RS08405 (RJY17_08405) - 1577453..1578301 (-) 849 WP_003151387.1 DegV family protein -
  RJY17_RS08410 (RJY17_08410) degU 1578399..1579088 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RJY17_RS08415 (RJY17_08415) degS 1579165..1580328 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  RJY17_RS08420 (RJY17_08420) - 1580551..1581198 (+) 648 WP_061581228.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52765.21 Da        Isoelectric Point: 10.2539

>NTDB_id=882879 RJY17_RS08400 WP_094032535.1 1575959..1577344(-) (comFA) [Bacillus velezensis strain B5]
MSEGASEFSKVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITDEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYYWNQAYENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSVLYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITSGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=882879 RJY17_RS08400 WP_094032535.1 1575959..1577344(-) (comFA) [Bacillus velezensis strain B5]
ATGTCCGAAGGTGCTTCAGAATTTTCAAAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTACAGAAAAAGAATATATAACGGACGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTATTGGAATCAGGCCTATGAAAACAG
CTGGGAACCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGTTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACAGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATCACAAGCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

61.957

99.783

0.618