Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RJY17_RS06440 Genome accession   NZ_CP134692
Coordinates   1188028..1188672 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain B5     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1183028..1193672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJY17_RS06405 (RJY17_06405) - 1184213..1184644 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  RJY17_RS06410 (RJY17_06410) - 1184644..1184985 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  RJY17_RS06415 (RJY17_06415) - 1184978..1186459 (+) 1482 WP_094032819.1 Na+/H+ antiporter subunit D -
  RJY17_RS06420 (RJY17_06420) - 1186465..1186941 (+) 477 WP_094032818.1 Na+/H+ antiporter subunit E -
  RJY17_RS06425 (RJY17_06425) - 1186941..1187225 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  RJY17_RS06430 (RJY17_06430) mnhG 1187209..1187583 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  RJY17_RS06435 (RJY17_06435) - 1187623..1188006 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  RJY17_RS06440 (RJY17_06440) comA 1188028..1188672 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  RJY17_RS06445 (RJY17_06445) comP 1188753..1191059 (-) 2307 WP_094032817.1 sensor histidine kinase Regulator
  RJY17_RS06450 (RJY17_06450) comX 1191078..1191254 (-) 177 WP_015240484.1 competence pheromone ComX -
  RJY17_RS06455 (RJY17_06455) - 1191269..1192144 (-) 876 WP_025285191.1 polyprenyl synthetase family protein -
  RJY17_RS06460 (RJY17_06460) degQ 1192296..1192436 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  RJY17_RS06465 (RJY17_06465) - 1192899..1193240 (+) 342 WP_007408677.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=882873 RJY17_RS06440 WP_003152052.1 1188028..1188672(-) (comA) [Bacillus velezensis strain B5]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=882873 RJY17_RS06440 WP_003152052.1 1188028..1188672(-) (comA) [Bacillus velezensis strain B5]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGACAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864