Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   RL452_RS07495 Genome accession   NZ_CP134620
Coordinates   1543980..1544426 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Sa9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1538980..1549426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RL452_RS07465 (RL452_07455) gcvPA 1539906..1541252 (-) 1347 WP_000019695.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  RL452_RS07470 (RL452_07460) gcvT 1541272..1542363 (-) 1092 WP_000093341.1 glycine cleavage system aminomethyltransferase GcvT -
  RL452_RS07475 (RL452_07465) - 1542522..1543046 (-) 525 WP_001015120.1 shikimate kinase -
  RL452_RS07480 (RL452_07470) - 1543036..1543182 (-) 147 WP_078062659.1 hypothetical protein -
  RL452_RS07485 (RL452_07475) comGF 1543279..1543776 (-) 498 WP_052658450.1 competence type IV pilus minor pilin ComGF Machinery gene
  RL452_RS07490 (RL452_07480) comGE 1543694..1543993 (-) 300 WP_045157654.1 hypothetical protein Machinery gene
  RL452_RS07495 (RL452_07485) comGD 1543980..1544426 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  RL452_RS07500 (RL452_07490) comGC 1544404..1544715 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  RL452_RS07505 (RL452_07495) comGB 1544729..1545799 (-) 1071 Protein_1469 competence type IV pilus assembly protein ComGB -
  RL452_RS07510 (RL452_07500) comGA 1545771..1546745 (-) 975 WP_000697229.1 competence type IV pilus ATPase ComGA Machinery gene
  RL452_RS07515 (RL452_07505) - 1546797..1547420 (-) 624 WP_338595134.1 MBL fold metallo-hydrolase -
  RL452_RS07520 (RL452_07510) - 1547417..1547746 (-) 330 WP_001018873.1 MTH1187 family thiamine-binding protein -
  RL452_RS07525 (RL452_07515) - 1547746..1548732 (-) 987 WP_000161315.1 ROK family glucokinase -
  RL452_RS07530 (RL452_07520) - 1548729..1548932 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=882441 RL452_RS07495 WP_001796473.1 1543980..1544426(-) (comGD) [Staphylococcus aureus strain Sa9]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=882441 RL452_RS07495 WP_001796473.1 1543980..1544426(-) (comGD) [Staphylococcus aureus strain Sa9]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAGGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993